Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01880 and BPHYT_RS01885 are separated by 423 nucleotides BPHYT_RS01885 and BPHYT_RS01890 are separated by 132 nucleotides
BPHYT_RS01880: BPHYT_RS01880 - nitronate monooxygenase, at 427,454 to 428,554
_RS01880
BPHYT_RS01885: BPHYT_RS01885 - branched-chain amino acid ABC transporter substrate-binding protein, at 428,978 to 430,123
_RS01885
BPHYT_RS01890: BPHYT_RS01890 - cupin, at 430,256 to 431,272
_RS01890
Position (kb) 428
429
430
431 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 428.298 kb on + strand, within BPHYT_RS01880 at 428.417 kb on + strand, within BPHYT_RS01880 at 428.417 kb on + strand, within BPHYT_RS01880 at 428.417 kb on + strand, within BPHYT_RS01880 at 428.417 kb on + strand, within BPHYT_RS01880 at 428.418 kb on - strand, within BPHYT_RS01880 at 428.427 kb on + strand, within BPHYT_RS01880 at 428.621 kb on - strand at 428.636 kb on + strand at 428.749 kb on + strand at 428.749 kb on + strand at 428.752 kb on + strand at 428.752 kb on + strand at 428.752 kb on + strand at 428.752 kb on + strand at 428.803 kb on + strand at 428.804 kb on - strand at 428.804 kb on - strand at 428.819 kb on + strand at 428.944 kb on + strand at 428.945 kb on - strand at 428.975 kb on + strand at 428.975 kb on + strand at 428.975 kb on + strand at 428.975 kb on + strand at 429.335 kb on + strand, within BPHYT_RS01885 at 429.335 kb on + strand, within BPHYT_RS01885 at 429.335 kb on + strand, within BPHYT_RS01885 at 429.335 kb on + strand, within BPHYT_RS01885 at 429.336 kb on - strand at 429.336 kb on - strand, within BPHYT_RS01885 at 429.337 kb on + strand, within BPHYT_RS01885 at 429.461 kb on + strand, within BPHYT_RS01885 at 429.461 kb on + strand, within BPHYT_RS01885 at 429.665 kb on + strand, within BPHYT_RS01885 at 429.666 kb on - strand, within BPHYT_RS01885 at 429.666 kb on - strand, within BPHYT_RS01885 at 429.866 kb on + strand, within BPHYT_RS01885 at 429.866 kb on + strand, within BPHYT_RS01885 at 429.867 kb on - strand, within BPHYT_RS01885 at 429.900 kb on - strand, within BPHYT_RS01885 at 429.900 kb on - strand, within BPHYT_RS01885 at 429.915 kb on - strand, within BPHYT_RS01885 at 429.915 kb on - strand, within BPHYT_RS01885 at 429.926 kb on + strand, within BPHYT_RS01885 at 430.004 kb on + strand, within BPHYT_RS01885 at 430.005 kb on - strand, within BPHYT_RS01885 at 430.074 kb on - strand at 430.079 kb on + strand at 430.079 kb on + strand at 430.080 kb on - strand at 430.080 kb on - strand at 430.080 kb on - strand at 430.080 kb on - strand at 430.121 kb on + strand at 430.173 kb on + strand at 430.482 kb on - strand, within BPHYT_RS01890 at 430.498 kb on + strand at 430.499 kb on - strand, within BPHYT_RS01890 at 430.499 kb on - strand, within BPHYT_RS01890 at 430.566 kb on - strand, within BPHYT_RS01890 at 430.569 kb on - strand, within BPHYT_RS01890 at 430.569 kb on - strand, within BPHYT_RS01890 at 430.644 kb on - strand, within BPHYT_RS01890 at 430.757 kb on + strand, within BPHYT_RS01890 at 430.800 kb on - strand, within BPHYT_RS01890 at 430.800 kb on - strand, within BPHYT_RS01890 at 430.813 kb on + strand, within BPHYT_RS01890 at 430.877 kb on + strand, within BPHYT_RS01890 at 430.877 kb on + strand, within BPHYT_RS01890 at 431.030 kb on - strand, within BPHYT_RS01890
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 428,298 + BPHYT_RS01880 0.77 +0.7 428,417 + BPHYT_RS01880 0.87 -1.5 428,417 + BPHYT_RS01880 0.87 -1.1 428,417 + BPHYT_RS01880 0.87 +1.5 428,417 + BPHYT_RS01880 0.87 -0.9 428,418 - BPHYT_RS01880 0.88 +1.7 428,427 + BPHYT_RS01880 0.88 +0.2 428,621 - -0.8 428,636 + +0.0 428,749 + -0.3 428,749 + +1.3 428,752 + -0.3 428,752 + -1.6 428,752 + +0.6 428,752 + -0.5 428,803 + -1.0 428,804 - +0.8 428,804 - -0.9 428,819 + -0.4 428,944 + +0.2 428,945 - +1.4 428,975 + -1.8 428,975 + -0.4 428,975 + -0.6 428,975 + -0.1 429,335 + BPHYT_RS01885 0.31 -2.6 429,335 + BPHYT_RS01885 0.31 -1.9 429,335 + BPHYT_RS01885 0.31 -1.2 429,335 + BPHYT_RS01885 0.31 -1.8 429,336 - +0.9 429,336 - BPHYT_RS01885 0.31 -1.1 429,337 + BPHYT_RS01885 0.31 +0.1 429,461 + BPHYT_RS01885 0.42 -1.6 429,461 + BPHYT_RS01885 0.42 -1.4 429,665 + BPHYT_RS01885 0.60 -1.9 429,666 - BPHYT_RS01885 0.60 -1.3 429,666 - BPHYT_RS01885 0.60 -0.1 429,866 + BPHYT_RS01885 0.77 -1.6 429,866 + BPHYT_RS01885 0.77 -0.9 429,867 - BPHYT_RS01885 0.78 -1.6 429,900 - BPHYT_RS01885 0.80 -1.8 429,900 - BPHYT_RS01885 0.80 -0.9 429,915 - BPHYT_RS01885 0.82 -2.1 429,915 - BPHYT_RS01885 0.82 -1.5 429,926 + BPHYT_RS01885 0.83 -0.3 430,004 + BPHYT_RS01885 0.90 -0.6 430,005 - BPHYT_RS01885 0.90 -1.4 430,074 - -1.1 430,079 + +3.4 430,079 + -0.4 430,080 - -1.0 430,080 - -1.8 430,080 - -1.4 430,080 - -1.6 430,121 + +1.0 430,173 + +1.3 430,482 - BPHYT_RS01890 0.22 -0.7 430,498 + +0.7 430,499 - BPHYT_RS01890 0.24 +1.2 430,499 - BPHYT_RS01890 0.24 -0.0 430,566 - BPHYT_RS01890 0.30 +0.6 430,569 - BPHYT_RS01890 0.31 +0.1 430,569 - BPHYT_RS01890 0.31 -0.5 430,644 - BPHYT_RS01890 0.38 +0.5 430,757 + BPHYT_RS01890 0.49 +1.0 430,800 - BPHYT_RS01890 0.53 -0.9 430,800 - BPHYT_RS01890 0.53 +2.3 430,813 + BPHYT_RS01890 0.55 +1.3 430,877 + BPHYT_RS01890 0.61 +0.2 430,877 + BPHYT_RS01890 0.61 +0.0 431,030 - BPHYT_RS01890 0.76 -0.4
Or see this region's nucleotide sequence