Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01800 and BPHYT_RS01810 are separated by 699 nucleotides BPHYT_RS01810 and BPHYT_RS01815 are separated by 46 nucleotides
BPHYT_RS01800: BPHYT_RS01800 - ferredoxin--NADP reductase, at 409,220 to 409,990
_RS01800
BPHYT_RS01810: BPHYT_RS01810 - sugar ABC transporter permease, at 410,690 to 411,649
_RS01810
BPHYT_RS01815: BPHYT_RS01815 - sugar ABC transporter permease, at 411,696 to 412,706
_RS01815
Position (kb) 410
411
412 Strain fitness (log2 ratio) -2
-1
0
1 at 410.033 kb on - strand at 410.210 kb on + strand at 410.211 kb on - strand at 410.381 kb on + strand at 410.568 kb on - strand at 410.793 kb on + strand, within BPHYT_RS01810 at 411.040 kb on - strand, within BPHYT_RS01810 at 411.319 kb on + strand, within BPHYT_RS01810 at 411.417 kb on + strand, within BPHYT_RS01810 at 411.541 kb on - strand, within BPHYT_RS01810 at 411.541 kb on - strand, within BPHYT_RS01810 at 411.565 kb on - strand at 411.602 kb on + strand at 411.793 kb on + strand at 411.841 kb on + strand, within BPHYT_RS01815 at 411.995 kb on - strand, within BPHYT_RS01815 at 412.037 kb on - strand, within BPHYT_RS01815 at 412.137 kb on + strand, within BPHYT_RS01815 at 412.137 kb on + strand, within BPHYT_RS01815
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 410,033 - -0.5 410,210 + -0.8 410,211 - -0.1 410,381 + -1.0 410,568 - -0.2 410,793 + BPHYT_RS01810 0.11 +0.8 411,040 - BPHYT_RS01810 0.36 +0.1 411,319 + BPHYT_RS01810 0.66 -1.9 411,417 + BPHYT_RS01810 0.76 -0.6 411,541 - BPHYT_RS01810 0.89 +0.8 411,541 - BPHYT_RS01810 0.89 -0.1 411,565 - -0.7 411,602 + +0.0 411,793 + +0.1 411,841 + BPHYT_RS01815 0.14 -0.5 411,995 - BPHYT_RS01815 0.30 -1.2 412,037 - BPHYT_RS01815 0.34 +0.0 412,137 + BPHYT_RS01815 0.44 -2.1 412,137 + BPHYT_RS01815 0.44 -0.1
Or see this region's nucleotide sequence