Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01785 and BPHYT_RS01790 are separated by 294 nucleotides BPHYT_RS01790 and BPHYT_RS01795 are separated by 10 nucleotides BPHYT_RS01795 and BPHYT_RS01800 are separated by 434 nucleotides
BPHYT_RS01785: BPHYT_RS01785 - amino acid permease, at 405,554 to 406,945
_RS01785
BPHYT_RS01790: BPHYT_RS01790 - LuxR family transcriptional regulator, at 407,240 to 407,896
_RS01790
BPHYT_RS01795: BPHYT_RS01795 - histidine kinase, at 407,907 to 408,785
_RS01795
BPHYT_RS01800: BPHYT_RS01800 - ferredoxin--NADP reductase, at 409,220 to 409,990
_RS01800
Position (kb) 407
408
409 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 406.961 kb on + strand at 406.961 kb on + strand at 407.007 kb on + strand at 407.289 kb on + strand at 407.289 kb on + strand at 407.289 kb on + strand at 407.290 kb on - strand at 407.290 kb on - strand at 407.290 kb on - strand at 407.389 kb on + strand, within BPHYT_RS01790 at 407.434 kb on - strand, within BPHYT_RS01790 at 407.462 kb on + strand, within BPHYT_RS01790 at 407.462 kb on + strand, within BPHYT_RS01790 at 407.487 kb on + strand, within BPHYT_RS01790 at 407.523 kb on + strand, within BPHYT_RS01790 at 407.523 kb on + strand, within BPHYT_RS01790 at 407.524 kb on - strand, within BPHYT_RS01790 at 407.524 kb on - strand, within BPHYT_RS01790 at 407.629 kb on - strand, within BPHYT_RS01790 at 407.629 kb on - strand, within BPHYT_RS01790 at 407.629 kb on - strand, within BPHYT_RS01790 at 407.644 kb on - strand, within BPHYT_RS01790 at 407.644 kb on - strand, within BPHYT_RS01790 at 407.752 kb on - strand, within BPHYT_RS01790 at 407.752 kb on - strand, within BPHYT_RS01790 at 407.859 kb on - strand at 407.904 kb on + strand at 407.904 kb on + strand at 407.905 kb on - strand at 407.905 kb on - strand at 407.905 kb on - strand at 407.905 kb on - strand at 408.165 kb on + strand, within BPHYT_RS01795 at 408.779 kb on + strand at 408.779 kb on + strand at 408.780 kb on - strand at 408.780 kb on - strand at 408.780 kb on - strand at 408.950 kb on - strand at 409.007 kb on + strand at 409.007 kb on + strand at 409.008 kb on - strand at 409.009 kb on + strand at 409.009 kb on + strand at 409.010 kb on - strand at 409.018 kb on - strand at 409.018 kb on - strand at 409.054 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 406,961 + +0.5 406,961 + -0.5 407,007 + +0.1 407,289 + +1.8 407,289 + +1.5 407,289 + +2.7 407,290 - +2.3 407,290 - +1.5 407,290 - +1.9 407,389 + BPHYT_RS01790 0.23 +1.6 407,434 - BPHYT_RS01790 0.30 +1.7 407,462 + BPHYT_RS01790 0.34 +0.1 407,462 + BPHYT_RS01790 0.34 +2.4 407,487 + BPHYT_RS01790 0.38 +2.0 407,523 + BPHYT_RS01790 0.43 +1.6 407,523 + BPHYT_RS01790 0.43 +2.0 407,524 - BPHYT_RS01790 0.43 +1.6 407,524 - BPHYT_RS01790 0.43 +1.3 407,629 - BPHYT_RS01790 0.59 +2.2 407,629 - BPHYT_RS01790 0.59 +1.5 407,629 - BPHYT_RS01790 0.59 +1.5 407,644 - BPHYT_RS01790 0.61 +2.2 407,644 - BPHYT_RS01790 0.61 +0.9 407,752 - BPHYT_RS01790 0.78 +1.7 407,752 - BPHYT_RS01790 0.78 +1.5 407,859 - +1.8 407,904 + +2.4 407,904 + +1.9 407,905 - +1.3 407,905 - +1.4 407,905 - +1.0 407,905 - +0.9 408,165 + BPHYT_RS01795 0.29 +1.8 408,779 + +2.0 408,779 + +1.6 408,780 - +1.6 408,780 - +1.6 408,780 - +1.8 408,950 - +0.4 409,007 + +2.3 409,007 + +4.2 409,008 - +0.7 409,009 + +1.3 409,009 + +1.0 409,010 - -2.0 409,018 - +1.7 409,018 - -1.3 409,054 + +0.6
Or see this region's nucleotide sequence