Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS01735

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS01730 and BPHYT_RS01735 are separated by 27 nucleotidesBPHYT_RS01735 and BPHYT_RS01740 are separated by 104 nucleotides BPHYT_RS01730: BPHYT_RS01730 - serine/threonine protein kinase, at 393,311 to 394,339 _RS01730 BPHYT_RS01735: BPHYT_RS01735 - membrane protein, at 394,367 to 396,268 _RS01735 BPHYT_RS01740: BPHYT_RS01740 - hypothetical protein, at 396,373 to 397,395 _RS01740 Position (kb) 394 395 396 397Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 393.476 kb on + strand, within BPHYT_RS01730at 393.521 kb on + strand, within BPHYT_RS01730at 393.640 kb on + strand, within BPHYT_RS01730at 393.641 kb on - strand, within BPHYT_RS01730at 394.563 kb on + strand, within BPHYT_RS01735at 394.564 kb on - strand, within BPHYT_RS01735at 394.564 kb on - strand, within BPHYT_RS01735at 394.564 kb on - strand, within BPHYT_RS01735at 394.622 kb on + strand, within BPHYT_RS01735at 394.623 kb on - strand, within BPHYT_RS01735at 394.819 kb on + strandat 394.820 kb on - strand, within BPHYT_RS01735at 394.820 kb on - strand, within BPHYT_RS01735at 395.169 kb on + strand, within BPHYT_RS01735at 395.170 kb on - strand, within BPHYT_RS01735at 395.170 kb on - strand, within BPHYT_RS01735at 395.194 kb on + strand, within BPHYT_RS01735at 395.194 kb on + strand, within BPHYT_RS01735at 395.194 kb on + strand, within BPHYT_RS01735at 395.194 kb on + strand, within BPHYT_RS01735at 395.195 kb on - strand, within BPHYT_RS01735at 395.195 kb on - strand, within BPHYT_RS01735at 395.195 kb on - strand, within BPHYT_RS01735at 395.195 kb on - strand, within BPHYT_RS01735at 395.308 kb on - strand, within BPHYT_RS01735at 395.406 kb on + strand, within BPHYT_RS01735at 395.406 kb on + strand, within BPHYT_RS01735at 395.407 kb on - strand, within BPHYT_RS01735at 395.433 kb on + strand, within BPHYT_RS01735at 395.433 kb on + strand, within BPHYT_RS01735at 395.608 kb on - strand, within BPHYT_RS01735at 395.653 kb on - strand, within BPHYT_RS01735at 395.751 kb on + strand, within BPHYT_RS01735at 395.752 kb on - strand, within BPHYT_RS01735at 395.752 kb on - strand, within BPHYT_RS01735at 395.752 kb on - strand, within BPHYT_RS01735at 395.767 kb on + strand, within BPHYT_RS01735at 396.003 kb on + strand, within BPHYT_RS01735at 396.051 kb on + strand, within BPHYT_RS01735at 396.051 kb on + strand, within BPHYT_RS01735at 396.051 kb on + strand, within BPHYT_RS01735at 396.051 kb on + strand, within BPHYT_RS01735at 396.052 kb on - strand, within BPHYT_RS01735at 396.052 kb on - strand, within BPHYT_RS01735at 396.085 kb on + strandat 396.085 kb on + strandat 396.172 kb on - strandat 396.289 kb on + strandat 396.289 kb on + strandat 396.312 kb on - strandat 396.531 kb on - strand, within BPHYT_RS01740at 396.567 kb on + strand, within BPHYT_RS01740at 396.641 kb on + strand, within BPHYT_RS01740at 396.642 kb on - strandat 396.766 kb on - strand, within BPHYT_RS01740at 396.766 kb on - strand, within BPHYT_RS01740at 396.766 kb on - strand, within BPHYT_RS01740at 396.806 kb on + strand, within BPHYT_RS01740at 396.806 kb on + strand, within BPHYT_RS01740at 396.839 kb on + strand, within BPHYT_RS01740at 397.037 kb on - strand, within BPHYT_RS01740

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
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393,476 + BPHYT_RS01730 0.16 -1.9
393,521 + BPHYT_RS01730 0.20 +1.1
393,640 + BPHYT_RS01730 0.32 +1.4
393,641 - BPHYT_RS01730 0.32 +1.0
394,563 + BPHYT_RS01735 0.10 -0.1
394,564 - BPHYT_RS01735 0.10 -0.6
394,564 - BPHYT_RS01735 0.10 -1.8
394,564 - BPHYT_RS01735 0.10 -1.1
394,622 + BPHYT_RS01735 0.13 -0.2
394,623 - BPHYT_RS01735 0.13 +0.3
394,819 + +1.5
394,820 - BPHYT_RS01735 0.24 +0.1
394,820 - BPHYT_RS01735 0.24 -0.7
395,169 + BPHYT_RS01735 0.42 +0.0
395,170 - BPHYT_RS01735 0.42 +0.1
395,170 - BPHYT_RS01735 0.42 +1.5
395,194 + BPHYT_RS01735 0.43 -3.9
395,194 + BPHYT_RS01735 0.43 +0.1
395,194 + BPHYT_RS01735 0.43 -0.4
395,194 + BPHYT_RS01735 0.43 -0.1
395,195 - BPHYT_RS01735 0.44 +0.8
395,195 - BPHYT_RS01735 0.44 -2.0
395,195 - BPHYT_RS01735 0.44 -0.4
395,195 - BPHYT_RS01735 0.44 -0.3
395,308 - BPHYT_RS01735 0.49 -0.3
395,406 + BPHYT_RS01735 0.55 -1.1
395,406 + BPHYT_RS01735 0.55 -1.0
395,407 - BPHYT_RS01735 0.55 -0.4
395,433 + BPHYT_RS01735 0.56 -0.4
395,433 + BPHYT_RS01735 0.56 +1.0
395,608 - BPHYT_RS01735 0.65 +0.5
395,653 - BPHYT_RS01735 0.68 -0.9
395,751 + BPHYT_RS01735 0.73 +0.5
395,752 - BPHYT_RS01735 0.73 +0.8
395,752 - BPHYT_RS01735 0.73 -0.1
395,752 - BPHYT_RS01735 0.73 +0.7
395,767 + BPHYT_RS01735 0.74 +1.1
396,003 + BPHYT_RS01735 0.86 -0.2
396,051 + BPHYT_RS01735 0.89 -0.0
396,051 + BPHYT_RS01735 0.89 -1.0
396,051 + BPHYT_RS01735 0.89 -0.3
396,051 + BPHYT_RS01735 0.89 +0.1
396,052 - BPHYT_RS01735 0.89 -0.7
396,052 - BPHYT_RS01735 0.89 -1.3
396,085 + +1.8
396,085 + +0.1
396,172 - -1.7
396,289 + +1.5
396,289 + -0.6
396,312 - -1.1
396,531 - BPHYT_RS01740 0.15 -3.3
396,567 + BPHYT_RS01740 0.19 -0.8
396,641 + BPHYT_RS01740 0.26 -0.5
396,642 - +3.7
396,766 - BPHYT_RS01740 0.38 -0.4
396,766 - BPHYT_RS01740 0.38 +1.0
396,766 - BPHYT_RS01740 0.38 -1.2
396,806 + BPHYT_RS01740 0.42 +0.0
396,806 + BPHYT_RS01740 0.42 -0.1
396,839 + BPHYT_RS01740 0.46 -2.1
397,037 - BPHYT_RS01740 0.65 -1.1

Or see this region's nucleotide sequence