Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01705 and BPHYT_RS01710 are separated by 241 nucleotides BPHYT_RS01710 and BPHYT_RS01715 overlap by 4 nucleotides
BPHYT_RS01705: BPHYT_RS01705 - MFS transporter, at 385,109 to 386,311
_RS01705
BPHYT_RS01710: BPHYT_RS01710 - RND transporter, at 386,553 to 388,082
_RS01710
BPHYT_RS01715: BPHYT_RS01715 - RND transporter, at 388,079 to 389,284
_RS01715
Position (kb) 386
387
388
389 Strain fitness (log2 ratio) -1
0
1
2
3 at 385.560 kb on + strand, within BPHYT_RS01705 at 385.560 kb on + strand, within BPHYT_RS01705 at 385.561 kb on - strand, within BPHYT_RS01705 at 385.561 kb on - strand, within BPHYT_RS01705 at 385.590 kb on + strand, within BPHYT_RS01705 at 385.590 kb on + strand, within BPHYT_RS01705 at 385.590 kb on + strand, within BPHYT_RS01705 at 385.596 kb on + strand, within BPHYT_RS01705 at 385.597 kb on - strand, within BPHYT_RS01705 at 385.929 kb on + strand, within BPHYT_RS01705 at 385.929 kb on + strand, within BPHYT_RS01705 at 385.929 kb on + strand, within BPHYT_RS01705 at 385.930 kb on - strand, within BPHYT_RS01705 at 386.048 kb on - strand, within BPHYT_RS01705 at 386.048 kb on - strand, within BPHYT_RS01705 at 386.215 kb on - strand at 386.356 kb on + strand at 386.357 kb on - strand at 386.448 kb on + strand at 386.448 kb on + strand at 386.555 kb on - strand at 386.769 kb on - strand, within BPHYT_RS01710 at 387.043 kb on + strand, within BPHYT_RS01710 at 387.043 kb on + strand, within BPHYT_RS01710 at 387.043 kb on + strand, within BPHYT_RS01710 at 387.043 kb on + strand, within BPHYT_RS01710 at 387.044 kb on - strand, within BPHYT_RS01710 at 387.044 kb on - strand, within BPHYT_RS01710 at 387.392 kb on - strand, within BPHYT_RS01710 at 387.424 kb on + strand, within BPHYT_RS01710 at 387.925 kb on + strand, within BPHYT_RS01710 at 387.925 kb on + strand, within BPHYT_RS01710 at 387.925 kb on + strand, within BPHYT_RS01710 at 387.926 kb on - strand, within BPHYT_RS01710 at 387.926 kb on - strand, within BPHYT_RS01710 at 387.926 kb on - strand, within BPHYT_RS01710 at 387.958 kb on + strand at 387.959 kb on - strand at 388.206 kb on - strand, within BPHYT_RS01715 at 388.206 kb on - strand, within BPHYT_RS01715 at 388.415 kb on + strand, within BPHYT_RS01715 at 388.416 kb on - strand, within BPHYT_RS01715 at 388.563 kb on + strand, within BPHYT_RS01715 at 388.689 kb on + strand, within BPHYT_RS01715 at 388.690 kb on - strand, within BPHYT_RS01715 at 388.690 kb on - strand, within BPHYT_RS01715
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 385,560 + BPHYT_RS01705 0.37 -0.0 385,560 + BPHYT_RS01705 0.37 -0.1 385,561 - BPHYT_RS01705 0.38 -0.5 385,561 - BPHYT_RS01705 0.38 +0.1 385,590 + BPHYT_RS01705 0.40 -0.5 385,590 + BPHYT_RS01705 0.40 -1.3 385,590 + BPHYT_RS01705 0.40 -0.2 385,596 + BPHYT_RS01705 0.40 -0.2 385,597 - BPHYT_RS01705 0.41 -0.1 385,929 + BPHYT_RS01705 0.68 -1.5 385,929 + BPHYT_RS01705 0.68 -0.8 385,929 + BPHYT_RS01705 0.68 +0.0 385,930 - BPHYT_RS01705 0.68 +0.2 386,048 - BPHYT_RS01705 0.78 +0.6 386,048 - BPHYT_RS01705 0.78 +0.1 386,215 - -0.0 386,356 + -0.7 386,357 - -0.7 386,448 + +0.1 386,448 + +1.0 386,555 - -1.1 386,769 - BPHYT_RS01710 0.14 -0.3 387,043 + BPHYT_RS01710 0.32 -0.5 387,043 + BPHYT_RS01710 0.32 +0.7 387,043 + BPHYT_RS01710 0.32 +0.8 387,043 + BPHYT_RS01710 0.32 -1.1 387,044 - BPHYT_RS01710 0.32 -0.3 387,044 - BPHYT_RS01710 0.32 -0.6 387,392 - BPHYT_RS01710 0.55 +0.3 387,424 + BPHYT_RS01710 0.57 -0.1 387,925 + BPHYT_RS01710 0.90 +2.5 387,925 + BPHYT_RS01710 0.90 +1.4 387,925 + BPHYT_RS01710 0.90 -0.3 387,926 - BPHYT_RS01710 0.90 +0.1 387,926 - BPHYT_RS01710 0.90 +0.7 387,926 - BPHYT_RS01710 0.90 +0.7 387,958 + -0.5 387,959 - +0.9 388,206 - BPHYT_RS01715 0.11 +0.1 388,206 - BPHYT_RS01715 0.11 +3.4 388,415 + BPHYT_RS01715 0.28 -0.2 388,416 - BPHYT_RS01715 0.28 +0.2 388,563 + BPHYT_RS01715 0.40 -0.1 388,689 + BPHYT_RS01715 0.51 -0.1 388,690 - BPHYT_RS01715 0.51 -0.6 388,690 - BPHYT_RS01715 0.51 +0.4
Or see this region's nucleotide sequence