Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS01675

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
379,855	-				+2.1
379,889	-				+0.4
379,889	-				+0.9
379,889	-				-0.1
379,904	+				-0.4
379,904	+				-0.8
379,921	+				-0.0
379,981	+				-0.5
381,434	+				+0.2
381,435	-				+1.4
381,435	-				+0.2
381,443	+				-0.7
381,801	+				-2.5
381,801	+				-2.2
381,801	+				+0.8
381,801	+				+0.3
381,802	-				-0.0
381,802	-				-0.2
381,802	-				-1.7
381,820	-				-0.2
381,820	-				-0.4
381,933	-				-0.0
381,933	-				-0.3
381,960	-				-0.9
382,007	-				+0.2
382,007	-				-0.2
382,027	+				-0.5
382,027	+				+0.5
382,028	-				+1.3
382,061	+				+0.5
382,170	-				-0.4
382,170	-				+0.7
382,170	-				-1.0
382,176	+				+0.6
382,176	+				-1.2
382,176	+				-0.2
382,176	+				-0.5
382,177	-				+0.3
382,177	-				+0.2