Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS01665

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
377,021	+				-3.6
377,021	+				-1.1
377,427	+		BPHYT_RS01660	0.40	-1.7
377,833	-				-0.7
377,917	-				+0.4
378,820	+				-3.2
378,820	+				-2.6
378,825	+				-0.2
378,825	+				-0.3
378,826	-				-0.4
378,826	-				+0.0
378,826	-				+1.1
378,863	-				-0.5
378,863	-				+0.7