Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01650 and BPHYT_RS01655 are separated by 94 nucleotides BPHYT_RS01655 and BPHYT_RS01660 are separated by 44 nucleotides BPHYT_RS01660 and BPHYT_RS01665 are separated by 57 nucleotides
BPHYT_RS01650: BPHYT_RS01650 - 23S rRNA methyltransferase, at 374,870 to 376,072
_RS01650
BPHYT_RS01655: BPHYT_RS01655 - tyrosine recombinase XerC, at 376,167 to 377,090
_RS01655
BPHYT_RS01660: BPHYT_RS01660 - hypothetical protein, at 377,135 to 377,857
_RS01660
BPHYT_RS01665: BPHYT_RS01665 - diaminopimelate epimerase, at 377,915 to 378,814
_RS01665
Position (kb) 376
377
378 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 375.373 kb on - strand, within BPHYT_RS01650 at 375.447 kb on + strand, within BPHYT_RS01650 at 375.447 kb on + strand, within BPHYT_RS01650 at 375.447 kb on + strand, within BPHYT_RS01650 at 375.447 kb on + strand, within BPHYT_RS01650 at 375.447 kb on + strand, within BPHYT_RS01650 at 375.448 kb on - strand, within BPHYT_RS01650 at 375.723 kb on + strand, within BPHYT_RS01650 at 375.723 kb on + strand, within BPHYT_RS01650 at 375.723 kb on + strand, within BPHYT_RS01650 at 375.724 kb on - strand, within BPHYT_RS01650 at 375.724 kb on - strand, within BPHYT_RS01650 at 375.724 kb on - strand, within BPHYT_RS01650 at 375.724 kb on - strand, within BPHYT_RS01650 at 375.724 kb on - strand, within BPHYT_RS01650 at 375.828 kb on - strand, within BPHYT_RS01650 at 375.913 kb on - strand, within BPHYT_RS01650 at 376.009 kb on - strand at 376.009 kb on - strand at 376.060 kb on + strand at 376.205 kb on - strand at 376.238 kb on + strand at 376.240 kb on + strand at 376.241 kb on - strand at 376.241 kb on - strand at 376.241 kb on - strand at 376.256 kb on + strand at 377.021 kb on + strand at 377.021 kb on + strand at 377.427 kb on + strand, within BPHYT_RS01660 at 377.833 kb on - strand at 377.917 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 375,373 - BPHYT_RS01650 0.42 -0.2 375,447 + BPHYT_RS01650 0.48 +0.5 375,447 + BPHYT_RS01650 0.48 -0.4 375,447 + BPHYT_RS01650 0.48 -0.1 375,447 + BPHYT_RS01650 0.48 -0.4 375,447 + BPHYT_RS01650 0.48 +1.0 375,448 - BPHYT_RS01650 0.48 +0.5 375,723 + BPHYT_RS01650 0.71 -0.6 375,723 + BPHYT_RS01650 0.71 +0.3 375,723 + BPHYT_RS01650 0.71 -0.1 375,724 - BPHYT_RS01650 0.71 -0.1 375,724 - BPHYT_RS01650 0.71 +0.8 375,724 - BPHYT_RS01650 0.71 -0.1 375,724 - BPHYT_RS01650 0.71 +0.4 375,724 - BPHYT_RS01650 0.71 +0.1 375,828 - BPHYT_RS01650 0.80 -0.3 375,913 - BPHYT_RS01650 0.87 +0.5 376,009 - -0.6 376,009 - +0.3 376,060 + +0.5 376,205 - -1.8 376,238 + -2.5 376,240 + -2.1 376,241 - -1.4 376,241 - -2.3 376,241 - -2.3 376,256 + +0.1 377,021 + -3.6 377,021 + -1.1 377,427 + BPHYT_RS01660 0.40 -1.7 377,833 - -0.7 377,917 - +0.4
Or see this region's nucleotide sequence