Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01610 and BPHYT_RS01615 are separated by 669 nucleotides BPHYT_RS01615 and BPHYT_RS01620 are separated by 134 nucleotides
BPHYT_RS01610: BPHYT_RS01610 - acetylglutamate kinase, at 364,789 to 365,688
_RS01610
BPHYT_RS01615: BPHYT_RS01615 - hypothetical protein, at 366,358 to 367,995
_RS01615
BPHYT_RS01620: BPHYT_RS01620 - sensor histidine kinase, at 368,130 to 369,440
_RS01620
Position (kb) 366
367
368 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 365.716 kb on - strand at 366.097 kb on + strand at 366.286 kb on + strand at 366.286 kb on + strand at 366.287 kb on - strand at 366.287 kb on - strand at 366.287 kb on - strand at 366.304 kb on + strand at 366.304 kb on + strand at 366.304 kb on + strand at 366.305 kb on - strand at 366.307 kb on + strand at 366.585 kb on + strand, within BPHYT_RS01615 at 366.585 kb on + strand, within BPHYT_RS01615 at 366.622 kb on - strand, within BPHYT_RS01615 at 366.719 kb on + strand, within BPHYT_RS01615 at 366.719 kb on + strand, within BPHYT_RS01615 at 366.897 kb on - strand, within BPHYT_RS01615 at 367.039 kb on - strand, within BPHYT_RS01615 at 367.121 kb on + strand, within BPHYT_RS01615 at 367.323 kb on + strand, within BPHYT_RS01615 at 367.324 kb on - strand, within BPHYT_RS01615 at 367.324 kb on - strand, within BPHYT_RS01615 at 367.324 kb on - strand, within BPHYT_RS01615 at 367.324 kb on - strand, within BPHYT_RS01615 at 367.421 kb on + strand, within BPHYT_RS01615 at 367.421 kb on + strand, within BPHYT_RS01615 at 367.422 kb on - strand, within BPHYT_RS01615 at 367.422 kb on - strand, within BPHYT_RS01615 at 367.512 kb on - strand, within BPHYT_RS01615 at 367.724 kb on + strand, within BPHYT_RS01615 at 367.990 kb on + strand at 367.991 kb on - strand at 368.090 kb on - strand at 368.100 kb on - strand at 368.365 kb on + strand, within BPHYT_RS01620 at 368.365 kb on + strand, within BPHYT_RS01620 at 368.439 kb on + strand, within BPHYT_RS01620 at 368.439 kb on + strand, within BPHYT_RS01620 at 368.439 kb on + strand, within BPHYT_RS01620 at 368.439 kb on + strand, within BPHYT_RS01620 at 368.439 kb on + strand, within BPHYT_RS01620 at 368.584 kb on - strand, within BPHYT_RS01620 at 368.672 kb on - strand, within BPHYT_RS01620 at 368.672 kb on - strand, within BPHYT_RS01620 at 368.672 kb on - strand, within BPHYT_RS01620 at 368.784 kb on - strand, within BPHYT_RS01620 at 368.847 kb on + strand, within BPHYT_RS01620 at 368.848 kb on - strand, within BPHYT_RS01620 at 368.848 kb on - strand, within BPHYT_RS01620 at 368.848 kb on - strand, within BPHYT_RS01620 at 368.849 kb on + strand, within BPHYT_RS01620 at 368.891 kb on + strand, within BPHYT_RS01620 at 368.891 kb on + strand, within BPHYT_RS01620 at 368.892 kb on - strand, within BPHYT_RS01620 at 368.892 kb on - strand, within BPHYT_RS01620
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 365,716 - +0.3 366,097 + -2.9 366,286 + -0.4 366,286 + -0.4 366,287 - +0.5 366,287 - -0.8 366,287 - -0.0 366,304 + -1.1 366,304 + -1.7 366,304 + -0.2 366,305 - +0.2 366,307 + -0.4 366,585 + BPHYT_RS01615 0.14 -0.1 366,585 + BPHYT_RS01615 0.14 -0.3 366,622 - BPHYT_RS01615 0.16 -0.2 366,719 + BPHYT_RS01615 0.22 +1.4 366,719 + BPHYT_RS01615 0.22 -0.3 366,897 - BPHYT_RS01615 0.33 -1.6 367,039 - BPHYT_RS01615 0.42 -1.0 367,121 + BPHYT_RS01615 0.47 -3.1 367,323 + BPHYT_RS01615 0.59 +1.1 367,324 - BPHYT_RS01615 0.59 -1.6 367,324 - BPHYT_RS01615 0.59 +1.2 367,324 - BPHYT_RS01615 0.59 -0.3 367,324 - BPHYT_RS01615 0.59 -0.1 367,421 + BPHYT_RS01615 0.65 -0.4 367,421 + BPHYT_RS01615 0.65 -1.6 367,422 - BPHYT_RS01615 0.65 +0.6 367,422 - BPHYT_RS01615 0.65 -0.0 367,512 - BPHYT_RS01615 0.70 -0.3 367,724 + BPHYT_RS01615 0.83 +0.4 367,990 + -0.4 367,991 - +0.5 368,090 - -2.3 368,100 - -3.0 368,365 + BPHYT_RS01620 0.18 +1.1 368,365 + BPHYT_RS01620 0.18 -1.0 368,439 + BPHYT_RS01620 0.24 -0.7 368,439 + BPHYT_RS01620 0.24 -3.1 368,439 + BPHYT_RS01620 0.24 -2.3 368,439 + BPHYT_RS01620 0.24 +2.1 368,439 + BPHYT_RS01620 0.24 +1.6 368,584 - BPHYT_RS01620 0.35 +2.1 368,672 - BPHYT_RS01620 0.41 +0.1 368,672 - BPHYT_RS01620 0.41 +2.1 368,672 - BPHYT_RS01620 0.41 +2.2 368,784 - BPHYT_RS01620 0.50 -0.2 368,847 + BPHYT_RS01620 0.55 +2.4 368,848 - BPHYT_RS01620 0.55 +1.1 368,848 - BPHYT_RS01620 0.55 +2.1 368,848 - BPHYT_RS01620 0.55 +2.1 368,849 + BPHYT_RS01620 0.55 +6.8 368,891 + BPHYT_RS01620 0.58 -0.6 368,891 + BPHYT_RS01620 0.58 -0.6 368,892 - BPHYT_RS01620 0.58 +2.1 368,892 - BPHYT_RS01620 0.58 +2.1
Or see this region's nucleotide sequence