Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01515 and BPHYT_RS01520 overlap by 4 nucleotides BPHYT_RS01520 and BPHYT_RS01525 are separated by 107 nucleotides BPHYT_RS01525 and BPHYT_RS01530 are separated by 10 nucleotides
BPHYT_RS01515: BPHYT_RS01515 - 2-dehydro-3-deoxyglucarate aldolase, at 344,546 to 345,328
_RS01515
BPHYT_RS01520: BPHYT_RS01520 - hypothetical protein, at 345,325 to 346,029
_RS01520
BPHYT_RS01525: BPHYT_RS01525 - cell wall shape-determining protein, at 346,137 to 347,285
_RS01525
BPHYT_RS01530: BPHYT_RS01530 - penicillin-binding protein 2, at 347,296 to 349,611
_RS01530
Position (kb) 346
347
348 Strain fitness (log2 ratio) -2
-1
0
1 at 345.200 kb on - strand, within BPHYT_RS01515 at 345.318 kb on + strand at 345.318 kb on + strand at 345.319 kb on - strand at 345.366 kb on + strand at 345.397 kb on + strand, within BPHYT_RS01520 at 345.398 kb on - strand, within BPHYT_RS01520 at 345.460 kb on + strand, within BPHYT_RS01520 at 345.541 kb on + strand, within BPHYT_RS01520 at 345.541 kb on + strand, within BPHYT_RS01520 at 345.542 kb on - strand, within BPHYT_RS01520 at 345.542 kb on - strand, within BPHYT_RS01520 at 345.627 kb on + strand, within BPHYT_RS01520 at 345.627 kb on + strand, within BPHYT_RS01520 at 345.627 kb on + strand, within BPHYT_RS01520 at 345.627 kb on + strand, within BPHYT_RS01520 at 345.628 kb on - strand, within BPHYT_RS01520 at 345.628 kb on - strand, within BPHYT_RS01520 at 345.628 kb on - strand at 345.662 kb on - strand, within BPHYT_RS01520 at 345.813 kb on + strand, within BPHYT_RS01520 at 345.860 kb on - strand, within BPHYT_RS01520 at 345.877 kb on + strand, within BPHYT_RS01520 at 345.877 kb on + strand, within BPHYT_RS01520 at 345.877 kb on + strand at 345.878 kb on - strand, within BPHYT_RS01520 at 345.928 kb on + strand, within BPHYT_RS01520 at 345.928 kb on + strand, within BPHYT_RS01520 at 345.928 kb on + strand, within BPHYT_RS01520 at 345.932 kb on - strand, within BPHYT_RS01520 at 345.976 kb on + strand at 345.976 kb on + strand at 345.977 kb on - strand at 345.977 kb on - strand at 346.099 kb on + strand at 346.139 kb on - strand at 347.735 kb on - strand, within BPHYT_RS01530
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 345,200 - BPHYT_RS01515 0.84 +0.1 345,318 + +0.3 345,318 + -0.6 345,319 - -0.4 345,366 + +0.3 345,397 + BPHYT_RS01520 0.10 -0.0 345,398 - BPHYT_RS01520 0.10 +1.4 345,460 + BPHYT_RS01520 0.19 +1.4 345,541 + BPHYT_RS01520 0.31 +0.4 345,541 + BPHYT_RS01520 0.31 -0.6 345,542 - BPHYT_RS01520 0.31 -1.8 345,542 - BPHYT_RS01520 0.31 -0.3 345,627 + BPHYT_RS01520 0.43 -0.5 345,627 + BPHYT_RS01520 0.43 +0.6 345,627 + BPHYT_RS01520 0.43 +0.5 345,627 + BPHYT_RS01520 0.43 +1.1 345,628 - BPHYT_RS01520 0.43 -0.0 345,628 - BPHYT_RS01520 0.43 -0.2 345,628 - -0.9 345,662 - BPHYT_RS01520 0.48 +0.2 345,813 + BPHYT_RS01520 0.69 -2.1 345,860 - BPHYT_RS01520 0.76 -1.2 345,877 + BPHYT_RS01520 0.78 +0.5 345,877 + BPHYT_RS01520 0.78 -0.6 345,877 + -0.5 345,878 - BPHYT_RS01520 0.78 -0.7 345,928 + BPHYT_RS01520 0.86 -0.3 345,928 + BPHYT_RS01520 0.86 -2.1 345,928 + BPHYT_RS01520 0.86 -1.3 345,932 - BPHYT_RS01520 0.86 +0.3 345,976 + +0.3 345,976 + +0.4 345,977 - +0.7 345,977 - -0.1 346,099 + +0.5 346,139 - -0.0 347,735 - BPHYT_RS01530 0.19 +1.0
Or see this region's nucleotide sequence