Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01195 and BPHYT_RS01200 are separated by 52 nucleotides BPHYT_RS01200 and BPHYT_RS01205 are separated by 21 nucleotides BPHYT_RS01205 and BPHYT_RS01210 are separated by 32 nucleotides
BPHYT_RS01195: BPHYT_RS01195 - hypothetical protein, at 275,139 to 277,109
_RS01195
BPHYT_RS01200: BPHYT_RS01200 - hypothetical protein, at 277,162 to 279,012
_RS01200
BPHYT_RS01205: BPHYT_RS01205 - hypothetical protein, at 279,034 to 279,222
_RS01205
BPHYT_RS01210: BPHYT_RS01210 - hypothetical protein, at 279,255 to 280,337
_RS01210
Position (kb) 277
278
279
280 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 276.211 kb on - strand, within BPHYT_RS01195 at 276.440 kb on + strand, within BPHYT_RS01195 at 276.567 kb on + strand, within BPHYT_RS01195 at 276.576 kb on + strand, within BPHYT_RS01195 at 276.577 kb on - strand, within BPHYT_RS01195 at 276.577 kb on - strand, within BPHYT_RS01195 at 276.856 kb on - strand, within BPHYT_RS01195 at 277.009 kb on + strand at 277.009 kb on + strand at 277.071 kb on - strand at 277.090 kb on + strand at 277.135 kb on + strand at 277.136 kb on - strand at 277.150 kb on - strand at 277.186 kb on - strand at 277.195 kb on + strand at 277.199 kb on - strand at 277.199 kb on - strand at 277.266 kb on + strand at 277.267 kb on - strand at 277.366 kb on + strand, within BPHYT_RS01200 at 277.408 kb on + strand, within BPHYT_RS01200 at 277.408 kb on + strand, within BPHYT_RS01200 at 277.409 kb on - strand, within BPHYT_RS01200 at 277.594 kb on + strand, within BPHYT_RS01200 at 277.751 kb on - strand, within BPHYT_RS01200 at 277.751 kb on - strand, within BPHYT_RS01200 at 277.754 kb on - strand, within BPHYT_RS01200 at 277.808 kb on - strand, within BPHYT_RS01200 at 277.808 kb on - strand, within BPHYT_RS01200 at 277.892 kb on - strand, within BPHYT_RS01200 at 277.892 kb on - strand, within BPHYT_RS01200 at 278.037 kb on - strand, within BPHYT_RS01200 at 278.080 kb on + strand, within BPHYT_RS01200 at 278.281 kb on + strand, within BPHYT_RS01200 at 278.282 kb on - strand, within BPHYT_RS01200 at 278.296 kb on + strand, within BPHYT_RS01200 at 278.345 kb on - strand, within BPHYT_RS01200 at 278.377 kb on + strand, within BPHYT_RS01200 at 278.378 kb on - strand, within BPHYT_RS01200 at 278.378 kb on - strand, within BPHYT_RS01200 at 278.378 kb on - strand, within BPHYT_RS01200 at 278.608 kb on + strand, within BPHYT_RS01200 at 278.609 kb on - strand, within BPHYT_RS01200 at 279.034 kb on - strand at 279.169 kb on + strand, within BPHYT_RS01205 at 279.362 kb on + strand at 279.363 kb on - strand at 279.387 kb on + strand, within BPHYT_RS01210 at 279.407 kb on + strand, within BPHYT_RS01210 at 279.687 kb on - strand, within BPHYT_RS01210 at 279.687 kb on - strand, within BPHYT_RS01210
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 276,211 - BPHYT_RS01195 0.54 -0.1 276,440 + BPHYT_RS01195 0.66 -0.0 276,567 + BPHYT_RS01195 0.72 -3.5 276,576 + BPHYT_RS01195 0.73 +0.2 276,577 - BPHYT_RS01195 0.73 +0.1 276,577 - BPHYT_RS01195 0.73 -0.0 276,856 - BPHYT_RS01195 0.87 +0.9 277,009 + -0.7 277,009 + +0.4 277,071 - -0.0 277,090 + -2.0 277,135 + +0.4 277,136 - +1.3 277,150 - +0.3 277,186 - +0.4 277,195 + +1.0 277,199 - -0.0 277,199 - +0.1 277,266 + -0.3 277,267 - +1.7 277,366 + BPHYT_RS01200 0.11 -1.4 277,408 + BPHYT_RS01200 0.13 -2.3 277,408 + BPHYT_RS01200 0.13 -0.2 277,409 - BPHYT_RS01200 0.13 +2.7 277,594 + BPHYT_RS01200 0.23 -0.2 277,751 - BPHYT_RS01200 0.32 -2.4 277,751 - BPHYT_RS01200 0.32 -0.8 277,754 - BPHYT_RS01200 0.32 +1.7 277,808 - BPHYT_RS01200 0.35 +1.1 277,808 - BPHYT_RS01200 0.35 +2.3 277,892 - BPHYT_RS01200 0.39 -0.2 277,892 - BPHYT_RS01200 0.39 -0.7 278,037 - BPHYT_RS01200 0.47 -0.7 278,080 + BPHYT_RS01200 0.50 +0.2 278,281 + BPHYT_RS01200 0.60 +0.1 278,282 - BPHYT_RS01200 0.61 -0.8 278,296 + BPHYT_RS01200 0.61 +0.1 278,345 - BPHYT_RS01200 0.64 -2.4 278,377 + BPHYT_RS01200 0.66 +0.2 278,378 - BPHYT_RS01200 0.66 -0.2 278,378 - BPHYT_RS01200 0.66 -0.9 278,378 - BPHYT_RS01200 0.66 -0.7 278,608 + BPHYT_RS01200 0.78 -1.0 278,609 - BPHYT_RS01200 0.78 +0.0 279,034 - -1.7 279,169 + BPHYT_RS01205 0.71 +0.7 279,362 + -0.5 279,363 - -0.1 279,387 + BPHYT_RS01210 0.12 +0.1 279,407 + BPHYT_RS01210 0.14 -1.3 279,687 - BPHYT_RS01210 0.40 -0.3 279,687 - BPHYT_RS01210 0.40 +1.4
Or see this region's nucleotide sequence