Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01185 and BPHYT_RS01190 are separated by 153 nucleotides BPHYT_RS01190 and BPHYT_RS01195 are separated by 800 nucleotides
BPHYT_RS01185: BPHYT_RS01185 - sodium:sulfate symporter, at 271,984 to 273,444
_RS01185
BPHYT_RS01190: BPHYT_RS01190 - hypothetical protein, at 273,598 to 274,338
_RS01190
BPHYT_RS01195: BPHYT_RS01195 - hypothetical protein, at 275,139 to 277,109
_RS01195
Position (kb) 273
274
275 Strain fitness (log2 ratio) -2
-1
0
1 at 272.599 kb on + strand, within BPHYT_RS01185 at 272.599 kb on + strand, within BPHYT_RS01185 at 272.599 kb on + strand, within BPHYT_RS01185 at 272.599 kb on + strand at 272.599 kb on + strand, within BPHYT_RS01185 at 272.600 kb on - strand, within BPHYT_RS01185 at 272.600 kb on - strand, within BPHYT_RS01185 at 272.600 kb on - strand, within BPHYT_RS01185 at 272.600 kb on - strand, within BPHYT_RS01185 at 272.601 kb on + strand, within BPHYT_RS01185 at 272.671 kb on + strand, within BPHYT_RS01185 at 272.689 kb on + strand, within BPHYT_RS01185 at 272.698 kb on + strand, within BPHYT_RS01185 at 272.698 kb on + strand, within BPHYT_RS01185 at 272.699 kb on - strand, within BPHYT_RS01185 at 273.010 kb on + strand, within BPHYT_RS01185 at 273.083 kb on + strand, within BPHYT_RS01185 at 273.328 kb on - strand at 273.443 kb on - strand at 273.597 kb on + strand at 273.597 kb on + strand at 273.598 kb on - strand at 273.598 kb on - strand at 273.598 kb on - strand at 274.376 kb on - strand at 274.573 kb on + strand at 274.659 kb on - strand at 274.671 kb on - strand at 274.672 kb on + strand at 274.702 kb on - strand at 274.835 kb on + strand at 274.836 kb on - strand at 274.887 kb on - strand at 274.943 kb on + strand at 275.272 kb on - strand at 275.276 kb on + strand at 275.277 kb on - strand at 275.277 kb on - strand at 275.304 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 272,599 + BPHYT_RS01185 0.42 -0.7 272,599 + BPHYT_RS01185 0.42 +0.1 272,599 + BPHYT_RS01185 0.42 +0.9 272,599 + -0.9 272,599 + BPHYT_RS01185 0.42 -0.6 272,600 - BPHYT_RS01185 0.42 -1.0 272,600 - BPHYT_RS01185 0.42 -0.6 272,600 - BPHYT_RS01185 0.42 -2.3 272,600 - BPHYT_RS01185 0.42 -1.0 272,601 + BPHYT_RS01185 0.42 +0.1 272,671 + BPHYT_RS01185 0.47 -0.2 272,689 + BPHYT_RS01185 0.48 +0.7 272,698 + BPHYT_RS01185 0.49 -0.1 272,698 + BPHYT_RS01185 0.49 -1.2 272,699 - BPHYT_RS01185 0.49 -0.6 273,010 + BPHYT_RS01185 0.70 -0.9 273,083 + BPHYT_RS01185 0.75 -1.1 273,328 - -0.8 273,443 - +0.5 273,597 + +0.3 273,597 + -0.3 273,598 - -0.1 273,598 - +0.1 273,598 - -1.0 274,376 - -0.3 274,573 + +0.2 274,659 - +0.5 274,671 - +0.2 274,672 + -0.8 274,702 - -2.2 274,835 + -0.2 274,836 - -0.2 274,887 - +0.4 274,943 + +0.1 275,272 - -0.6 275,276 + -0.4 275,277 - -0.8 275,277 - +1.7 275,304 + +0.6
Or see this region's nucleotide sequence