Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01180 and BPHYT_RS01185 are separated by 105 nucleotides BPHYT_RS01185 and BPHYT_RS01190 are separated by 153 nucleotides
BPHYT_RS01180: BPHYT_RS01180 - AraC family transcriptional regulator, at 271,084 to 271,878
_RS01180
BPHYT_RS01185: BPHYT_RS01185 - sodium:sulfate symporter, at 271,984 to 273,444
_RS01185
BPHYT_RS01190: BPHYT_RS01190 - hypothetical protein, at 273,598 to 274,338
_RS01190
Position (kb) 271
272
273
274 Strain fitness (log2 ratio) -2
-1
0
1 at 271.001 kb on - strand at 271.059 kb on - strand at 271.607 kb on + strand, within BPHYT_RS01180 at 271.607 kb on + strand, within BPHYT_RS01180 at 271.761 kb on + strand, within BPHYT_RS01180 at 271.931 kb on + strand at 271.932 kb on - strand at 272.128 kb on + strand at 272.129 kb on - strand at 272.129 kb on - strand at 272.419 kb on + strand, within BPHYT_RS01185 at 272.420 kb on - strand, within BPHYT_RS01185 at 272.420 kb on - strand, within BPHYT_RS01185 at 272.599 kb on + strand, within BPHYT_RS01185 at 272.599 kb on + strand, within BPHYT_RS01185 at 272.599 kb on + strand, within BPHYT_RS01185 at 272.599 kb on + strand at 272.599 kb on + strand, within BPHYT_RS01185 at 272.600 kb on - strand, within BPHYT_RS01185 at 272.600 kb on - strand, within BPHYT_RS01185 at 272.600 kb on - strand, within BPHYT_RS01185 at 272.600 kb on - strand, within BPHYT_RS01185 at 272.601 kb on + strand, within BPHYT_RS01185 at 272.671 kb on + strand, within BPHYT_RS01185 at 272.689 kb on + strand, within BPHYT_RS01185 at 272.698 kb on + strand, within BPHYT_RS01185 at 272.698 kb on + strand, within BPHYT_RS01185 at 272.699 kb on - strand, within BPHYT_RS01185 at 273.010 kb on + strand, within BPHYT_RS01185 at 273.083 kb on + strand, within BPHYT_RS01185 at 273.328 kb on - strand at 273.443 kb on - strand at 273.597 kb on + strand at 273.597 kb on + strand at 273.598 kb on - strand at 273.598 kb on - strand at 273.598 kb on - strand at 274.376 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 271,001 - +0.5 271,059 - +0.5 271,607 + BPHYT_RS01180 0.66 -0.9 271,607 + BPHYT_RS01180 0.66 -0.1 271,761 + BPHYT_RS01180 0.85 -0.1 271,931 + +1.5 271,932 - -0.3 272,128 + -0.2 272,129 - -0.4 272,129 - -0.7 272,419 + BPHYT_RS01185 0.30 +0.4 272,420 - BPHYT_RS01185 0.30 -2.2 272,420 - BPHYT_RS01185 0.30 -2.1 272,599 + BPHYT_RS01185 0.42 -0.7 272,599 + BPHYT_RS01185 0.42 +0.1 272,599 + BPHYT_RS01185 0.42 +0.9 272,599 + -0.9 272,599 + BPHYT_RS01185 0.42 -0.6 272,600 - BPHYT_RS01185 0.42 -1.0 272,600 - BPHYT_RS01185 0.42 -0.6 272,600 - BPHYT_RS01185 0.42 -2.3 272,600 - BPHYT_RS01185 0.42 -1.0 272,601 + BPHYT_RS01185 0.42 +0.1 272,671 + BPHYT_RS01185 0.47 -0.2 272,689 + BPHYT_RS01185 0.48 +0.7 272,698 + BPHYT_RS01185 0.49 -0.1 272,698 + BPHYT_RS01185 0.49 -1.2 272,699 - BPHYT_RS01185 0.49 -0.6 273,010 + BPHYT_RS01185 0.70 -0.9 273,083 + BPHYT_RS01185 0.75 -1.1 273,328 - -0.8 273,443 - +0.5 273,597 + +0.3 273,597 + -0.3 273,598 - -0.1 273,598 - +0.1 273,598 - -1.0 274,376 - -0.3
Or see this region's nucleotide sequence