Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01035 and BPHYT_RS01040 overlap by 4 nucleotides BPHYT_RS01040 and BPHYT_RS01045 are separated by 192 nucleotides BPHYT_RS01045 and BPHYT_RS01050 are separated by 446 nucleotides
BPHYT_RS01035: BPHYT_RS01035 - cyanate hydratase, at 237,940 to 238,389
_RS01035
BPHYT_RS01040: BPHYT_RS01040 - Fis family transcriptional regulator, at 238,386 to 238,841
_RS01040
BPHYT_RS01045: BPHYT_RS01045 - hypothetical protein, at 239,034 to 239,327
_RS01045
BPHYT_RS01050: BPHYT_RS01050 - short-chain dehydrogenase, at 239,774 to 240,649
_RS01050
Position (kb) 239
240 Strain fitness (log2 ratio) -2
-1
0
1
2 at 238.204 kb on + strand, within BPHYT_RS01035 at 238.204 kb on + strand, within BPHYT_RS01035 at 238.376 kb on - strand at 238.384 kb on + strand at 238.385 kb on - strand at 238.388 kb on - strand at 238.657 kb on + strand, within BPHYT_RS01040 at 238.711 kb on + strand, within BPHYT_RS01040 at 238.712 kb on - strand, within BPHYT_RS01040 at 238.844 kb on + strand at 238.845 kb on - strand at 238.845 kb on - strand at 238.845 kb on - strand at 238.849 kb on - strand at 238.849 kb on - strand at 238.895 kb on + strand at 238.899 kb on + strand at 238.900 kb on - strand at 238.904 kb on + strand at 238.905 kb on - strand at 238.905 kb on - strand at 238.912 kb on - strand at 238.980 kb on + strand at 238.980 kb on + strand at 238.995 kb on + strand at 238.996 kb on - strand at 239.212 kb on + strand, within BPHYT_RS01045 at 239.212 kb on + strand, within BPHYT_RS01045 at 239.213 kb on - strand, within BPHYT_RS01045 at 239.213 kb on - strand, within BPHYT_RS01045 at 239.213 kb on - strand, within BPHYT_RS01045 at 239.213 kb on - strand, within BPHYT_RS01045 at 239.296 kb on + strand, within BPHYT_RS01045 at 239.302 kb on + strand at 239.302 kb on + strand at 239.302 kb on + strand at 239.303 kb on - strand at 239.303 kb on - strand at 239.325 kb on + strand at 239.339 kb on + strand at 239.339 kb on + strand at 239.340 kb on - strand at 239.340 kb on - strand at 239.424 kb on - strand at 239.434 kb on + strand at 239.434 kb on + strand at 239.762 kb on + strand at 239.785 kb on + strand at 239.785 kb on + strand at 239.786 kb on - strand at 239.786 kb on - strand at 239.876 kb on - strand, within BPHYT_RS01050 at 239.961 kb on + strand, within BPHYT_RS01050 at 239.962 kb on - strand, within BPHYT_RS01050 at 240.001 kb on - strand, within BPHYT_RS01050 at 240.133 kb on - strand, within BPHYT_RS01050
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 238,204 + BPHYT_RS01035 0.59 -0.4 238,204 + BPHYT_RS01035 0.59 -1.3 238,376 - +0.1 238,384 + +1.2 238,385 - +0.7 238,388 - +0.2 238,657 + BPHYT_RS01040 0.59 -1.1 238,711 + BPHYT_RS01040 0.71 -0.8 238,712 - BPHYT_RS01040 0.71 -0.9 238,844 + -0.0 238,845 - -0.4 238,845 - +0.1 238,845 - +0.2 238,849 - -0.1 238,849 - -0.3 238,895 + -1.3 238,899 + -0.7 238,900 - +0.3 238,904 + +1.4 238,905 - +1.8 238,905 - -0.5 238,912 - +0.5 238,980 + -1.2 238,980 + -0.4 238,995 + -0.0 238,996 - -2.1 239,212 + BPHYT_RS01045 0.61 -0.5 239,212 + BPHYT_RS01045 0.61 -0.4 239,213 - BPHYT_RS01045 0.61 -1.5 239,213 - BPHYT_RS01045 0.61 -2.0 239,213 - BPHYT_RS01045 0.61 -1.3 239,213 - BPHYT_RS01045 0.61 +0.3 239,296 + BPHYT_RS01045 0.89 -2.3 239,302 + -1.4 239,302 + -0.3 239,302 + -0.8 239,303 - +1.1 239,303 - -0.3 239,325 + +1.0 239,339 + -0.1 239,339 + -1.4 239,340 - -0.9 239,340 - +0.2 239,424 - -0.0 239,434 + -1.7 239,434 + -0.0 239,762 + +1.5 239,785 + -1.8 239,785 + +1.0 239,786 - +0.4 239,786 - -0.1 239,876 - BPHYT_RS01050 0.12 +0.3 239,961 + BPHYT_RS01050 0.21 -0.4 239,962 - BPHYT_RS01050 0.21 +0.6 240,001 - BPHYT_RS01050 0.26 -0.4 240,133 - BPHYT_RS01050 0.41 -0.3
Or see this region's nucleotide sequence