Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00890 and BPHYT_RS00895 are separated by 236 nucleotides BPHYT_RS00895 and BPHYT_RS00900 are separated by 38 nucleotides BPHYT_RS00900 and BPHYT_RS00905 overlap by 4 nucleotides
BPHYT_RS00890: BPHYT_RS00890 - membrane protein, at 204,111 to 205,199
_RS00890
BPHYT_RS00895: BPHYT_RS00895 - MFS transporter, at 205,436 to 206,818
_RS00895
BPHYT_RS00900: BPHYT_RS00900 - beta-lactamase, at 206,857 to 207,183
_RS00900
BPHYT_RS00905: BPHYT_RS00905 - ABC transporter substrate-binding protein, at 207,180 to 208,517
_RS00905
Position (kb) 205
206
207 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 204.436 kb on + strand, within BPHYT_RS00890 at 204.586 kb on + strand, within BPHYT_RS00890 at 204.620 kb on - strand, within BPHYT_RS00890 at 204.647 kb on - strand, within BPHYT_RS00890 at 204.654 kb on + strand, within BPHYT_RS00890 at 204.654 kb on + strand, within BPHYT_RS00890 at 204.654 kb on + strand, within BPHYT_RS00890 at 204.654 kb on + strand, within BPHYT_RS00890 at 204.655 kb on - strand, within BPHYT_RS00890 at 204.655 kb on - strand, within BPHYT_RS00890 at 204.655 kb on - strand, within BPHYT_RS00890 at 204.683 kb on - strand, within BPHYT_RS00890 at 204.794 kb on - strand, within BPHYT_RS00890 at 204.810 kb on + strand, within BPHYT_RS00890 at 204.991 kb on - strand, within BPHYT_RS00890 at 205.023 kb on - strand, within BPHYT_RS00890 at 205.247 kb on + strand at 205.675 kb on + strand, within BPHYT_RS00895 at 205.717 kb on - strand, within BPHYT_RS00895 at 205.747 kb on - strand, within BPHYT_RS00895 at 205.759 kb on + strand, within BPHYT_RS00895 at 205.935 kb on + strand, within BPHYT_RS00895 at 206.014 kb on - strand, within BPHYT_RS00895 at 206.193 kb on + strand, within BPHYT_RS00895 at 206.193 kb on + strand, within BPHYT_RS00895 at 206.390 kb on - strand, within BPHYT_RS00895 at 206.432 kb on - strand, within BPHYT_RS00895 at 206.537 kb on + strand, within BPHYT_RS00895 at 206.537 kb on + strand, within BPHYT_RS00895 at 206.538 kb on - strand, within BPHYT_RS00895 at 206.690 kb on + strand at 207.099 kb on - strand, within BPHYT_RS00900 at 207.700 kb on + strand, within BPHYT_RS00905 at 207.701 kb on - strand, within BPHYT_RS00905 at 207.701 kb on - strand, within BPHYT_RS00905 at 207.717 kb on + strand, within BPHYT_RS00905 at 207.718 kb on - strand, within BPHYT_RS00905 at 207.718 kb on - strand, within BPHYT_RS00905 at 207.724 kb on + strand, within BPHYT_RS00905 at 207.811 kb on - strand, within BPHYT_RS00905
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 204,436 + BPHYT_RS00890 0.30 -0.2 204,586 + BPHYT_RS00890 0.44 -2.5 204,620 - BPHYT_RS00890 0.47 +1.7 204,647 - BPHYT_RS00890 0.49 +1.5 204,654 + BPHYT_RS00890 0.50 -0.3 204,654 + BPHYT_RS00890 0.50 +0.3 204,654 + BPHYT_RS00890 0.50 +0.9 204,654 + BPHYT_RS00890 0.50 +1.1 204,655 - BPHYT_RS00890 0.50 +2.0 204,655 - BPHYT_RS00890 0.50 +0.6 204,655 - BPHYT_RS00890 0.50 -0.3 204,683 - BPHYT_RS00890 0.53 +0.5 204,794 - BPHYT_RS00890 0.63 -1.1 204,810 + BPHYT_RS00890 0.64 +0.9 204,991 - BPHYT_RS00890 0.81 -0.0 205,023 - BPHYT_RS00890 0.84 -0.2 205,247 + +0.1 205,675 + BPHYT_RS00895 0.17 +1.4 205,717 - BPHYT_RS00895 0.20 -1.2 205,747 - BPHYT_RS00895 0.22 -0.7 205,759 + BPHYT_RS00895 0.23 +0.5 205,935 + BPHYT_RS00895 0.36 +0.7 206,014 - BPHYT_RS00895 0.42 +0.5 206,193 + BPHYT_RS00895 0.55 +3.5 206,193 + BPHYT_RS00895 0.55 +0.5 206,390 - BPHYT_RS00895 0.69 +0.2 206,432 - BPHYT_RS00895 0.72 -0.3 206,537 + BPHYT_RS00895 0.80 -0.1 206,537 + BPHYT_RS00895 0.80 -0.0 206,538 - BPHYT_RS00895 0.80 +0.4 206,690 + -0.2 207,099 - BPHYT_RS00900 0.74 -0.4 207,700 + BPHYT_RS00905 0.39 +0.4 207,701 - BPHYT_RS00905 0.39 -0.7 207,701 - BPHYT_RS00905 0.39 +0.6 207,717 + BPHYT_RS00905 0.40 -0.1 207,718 - BPHYT_RS00905 0.40 -1.3 207,718 - BPHYT_RS00905 0.40 +0.8 207,724 + BPHYT_RS00905 0.41 +0.1 207,811 - BPHYT_RS00905 0.47 -0.8
Or see this region's nucleotide sequence