Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00880 and BPHYT_RS00885 are separated by 46 nucleotides BPHYT_RS00885 and BPHYT_RS00890 are separated by 724 nucleotides
BPHYT_RS00880: BPHYT_RS00880 - hypothetical protein, at 201,106 to 202,275
_RS00880
BPHYT_RS00885: BPHYT_RS00885 - chemotaxis protein CheY, at 202,322 to 203,386
_RS00885
BPHYT_RS00890: BPHYT_RS00890 - membrane protein, at 204,111 to 205,199
_RS00890
Position (kb) 202
203
204 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 201.583 kb on + strand, within BPHYT_RS00880 at 201.584 kb on - strand, within BPHYT_RS00880 at 201.848 kb on + strand, within BPHYT_RS00880 at 201.848 kb on + strand, within BPHYT_RS00880 at 201.849 kb on - strand, within BPHYT_RS00880 at 201.849 kb on - strand, within BPHYT_RS00880 at 201.849 kb on - strand, within BPHYT_RS00880 at 201.943 kb on + strand, within BPHYT_RS00880 at 201.943 kb on + strand, within BPHYT_RS00880 at 201.944 kb on - strand, within BPHYT_RS00880 at 201.944 kb on - strand, within BPHYT_RS00880 at 201.944 kb on - strand, within BPHYT_RS00880 at 201.952 kb on + strand, within BPHYT_RS00880 at 201.953 kb on - strand, within BPHYT_RS00880 at 202.007 kb on + strand, within BPHYT_RS00880 at 202.008 kb on - strand, within BPHYT_RS00880 at 202.008 kb on - strand, within BPHYT_RS00880 at 202.033 kb on + strand, within BPHYT_RS00880 at 202.033 kb on + strand, within BPHYT_RS00880 at 202.034 kb on - strand, within BPHYT_RS00880 at 202.137 kb on - strand, within BPHYT_RS00880 at 202.874 kb on - strand, within BPHYT_RS00885 at 203.234 kb on + strand, within BPHYT_RS00885 at 203.270 kb on + strand, within BPHYT_RS00885 at 203.341 kb on + strand at 203.364 kb on - strand at 203.705 kb on + strand at 203.705 kb on + strand at 203.706 kb on - strand at 203.728 kb on + strand at 203.793 kb on - strand at 203.858 kb on - strand at 203.870 kb on + strand at 203.871 kb on - strand at 203.872 kb on + strand at 203.994 kb on - strand at 203.994 kb on - strand at 204.054 kb on + strand at 204.054 kb on + strand at 204.055 kb on - strand at 204.055 kb on - strand at 204.157 kb on + strand at 204.227 kb on - strand, within BPHYT_RS00890 at 204.268 kb on + strand, within BPHYT_RS00890 at 204.374 kb on - strand, within BPHYT_RS00890
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 201,583 + BPHYT_RS00880 0.41 +0.1 201,584 - BPHYT_RS00880 0.41 +0.1 201,848 + BPHYT_RS00880 0.63 +0.9 201,848 + BPHYT_RS00880 0.63 -0.7 201,849 - BPHYT_RS00880 0.64 +0.9 201,849 - BPHYT_RS00880 0.64 -0.0 201,849 - BPHYT_RS00880 0.64 +0.6 201,943 + BPHYT_RS00880 0.72 +0.5 201,943 + BPHYT_RS00880 0.72 -0.7 201,944 - BPHYT_RS00880 0.72 -2.1 201,944 - BPHYT_RS00880 0.72 +0.2 201,944 - BPHYT_RS00880 0.72 -0.8 201,952 + BPHYT_RS00880 0.72 +1.1 201,953 - BPHYT_RS00880 0.72 +0.4 202,007 + BPHYT_RS00880 0.77 +0.6 202,008 - BPHYT_RS00880 0.77 +2.5 202,008 - BPHYT_RS00880 0.77 +0.0 202,033 + BPHYT_RS00880 0.79 +1.4 202,033 + BPHYT_RS00880 0.79 +0.6 202,034 - BPHYT_RS00880 0.79 -1.3 202,137 - BPHYT_RS00880 0.88 +0.9 202,874 - BPHYT_RS00885 0.52 -0.0 203,234 + BPHYT_RS00885 0.86 -1.2 203,270 + BPHYT_RS00885 0.89 -1.1 203,341 + +1.6 203,364 - +0.3 203,705 + -0.2 203,705 + +0.4 203,706 - +0.3 203,728 + +2.5 203,793 - +0.0 203,858 - -0.2 203,870 + +0.0 203,871 - -1.3 203,872 + +0.4 203,994 - -0.9 203,994 - -0.6 204,054 + +0.7 204,054 + -0.5 204,055 - -2.5 204,055 - +0.7 204,157 + -0.3 204,227 - BPHYT_RS00890 0.11 -0.8 204,268 + BPHYT_RS00890 0.14 -2.9 204,374 - BPHYT_RS00890 0.24 -1.2
Or see this region's nucleotide sequence