Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00875 and BPHYT_RS00880 are separated by 880 nucleotides BPHYT_RS00880 and BPHYT_RS00885 are separated by 46 nucleotides
BPHYT_RS00875: BPHYT_RS00875 - diguanylate cyclase, at 198,084 to 200,225
_RS00875
BPHYT_RS00880: BPHYT_RS00880 - hypothetical protein, at 201,106 to 202,275
_RS00880
BPHYT_RS00885: BPHYT_RS00885 - chemotaxis protein CheY, at 202,322 to 203,386
_RS00885
Position (kb) 201
202
203 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 200.246 kb on + strand at 200.246 kb on + strand at 200.246 kb on + strand at 200.247 kb on - strand at 200.299 kb on + strand at 200.300 kb on - strand at 200.628 kb on + strand at 200.885 kb on + strand at 200.885 kb on + strand at 200.886 kb on - strand at 200.953 kb on + strand at 200.954 kb on - strand at 201.016 kb on + strand at 201.270 kb on - strand, within BPHYT_RS00880 at 201.270 kb on - strand, within BPHYT_RS00880 at 201.583 kb on + strand, within BPHYT_RS00880 at 201.584 kb on - strand, within BPHYT_RS00880 at 201.848 kb on + strand, within BPHYT_RS00880 at 201.848 kb on + strand, within BPHYT_RS00880 at 201.849 kb on - strand, within BPHYT_RS00880 at 201.849 kb on - strand, within BPHYT_RS00880 at 201.849 kb on - strand, within BPHYT_RS00880 at 201.943 kb on + strand, within BPHYT_RS00880 at 201.943 kb on + strand, within BPHYT_RS00880 at 201.944 kb on - strand, within BPHYT_RS00880 at 201.944 kb on - strand, within BPHYT_RS00880 at 201.944 kb on - strand, within BPHYT_RS00880 at 201.952 kb on + strand, within BPHYT_RS00880 at 201.953 kb on - strand, within BPHYT_RS00880 at 202.007 kb on + strand, within BPHYT_RS00880 at 202.008 kb on - strand, within BPHYT_RS00880 at 202.008 kb on - strand, within BPHYT_RS00880 at 202.033 kb on + strand, within BPHYT_RS00880 at 202.033 kb on + strand, within BPHYT_RS00880 at 202.034 kb on - strand, within BPHYT_RS00880 at 202.137 kb on - strand, within BPHYT_RS00880 at 202.874 kb on - strand, within BPHYT_RS00885 at 203.234 kb on + strand, within BPHYT_RS00885 at 203.270 kb on + strand, within BPHYT_RS00885
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 200,246 + -0.5 200,246 + +1.0 200,246 + +0.8 200,247 - +1.3 200,299 + +3.8 200,300 - +0.7 200,628 + -0.4 200,885 + +1.0 200,885 + +0.3 200,886 - +0.4 200,953 + +1.5 200,954 - +1.9 201,016 + -0.5 201,270 - BPHYT_RS00880 0.14 +0.4 201,270 - BPHYT_RS00880 0.14 +1.1 201,583 + BPHYT_RS00880 0.41 +0.1 201,584 - BPHYT_RS00880 0.41 +0.1 201,848 + BPHYT_RS00880 0.63 +0.9 201,848 + BPHYT_RS00880 0.63 -0.7 201,849 - BPHYT_RS00880 0.64 +0.9 201,849 - BPHYT_RS00880 0.64 -0.0 201,849 - BPHYT_RS00880 0.64 +0.6 201,943 + BPHYT_RS00880 0.72 +0.5 201,943 + BPHYT_RS00880 0.72 -0.7 201,944 - BPHYT_RS00880 0.72 -2.1 201,944 - BPHYT_RS00880 0.72 +0.2 201,944 - BPHYT_RS00880 0.72 -0.8 201,952 + BPHYT_RS00880 0.72 +1.1 201,953 - BPHYT_RS00880 0.72 +0.4 202,007 + BPHYT_RS00880 0.77 +0.6 202,008 - BPHYT_RS00880 0.77 +2.5 202,008 - BPHYT_RS00880 0.77 +0.0 202,033 + BPHYT_RS00880 0.79 +1.4 202,033 + BPHYT_RS00880 0.79 +0.6 202,034 - BPHYT_RS00880 0.79 -1.3 202,137 - BPHYT_RS00880 0.88 +0.9 202,874 - BPHYT_RS00885 0.52 -0.0 203,234 + BPHYT_RS00885 0.86 -1.2 203,270 + BPHYT_RS00885 0.89 -1.1
Or see this region's nucleotide sequence