Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00755 and BPHYT_RS00760 overlap by 8 nucleotides BPHYT_RS00760 and BPHYT_RS00765 overlap by 4 nucleotides BPHYT_RS00765 and BPHYT_RS00770 are separated by 37 nucleotides
BPHYT_RS00755: BPHYT_RS00755 - cobyric acid synthase CobQ, at 172,963 to 173,835
_RS00755
BPHYT_RS00760: BPHYT_RS00760 - hypothetical protein, at 173,828 to 174,412
_RS00760
BPHYT_RS00765: BPHYT_RS00765 - lytic transglycosylase, at 174,409 to 175,086
_RS00765
BPHYT_RS00770: BPHYT_RS00770 - conjugal transfer protein TraC, at 175,124 to 175,465
_RS00770
Position (kb) 173
174
175 Strain fitness (log2 ratio) -1
0
1
2
3 at 172.830 kb on + strand at 172.830 kb on + strand at 172.830 kb on + strand at 173.069 kb on + strand, within BPHYT_RS00755 at 173.069 kb on + strand, within BPHYT_RS00755 at 173.069 kb on + strand, within BPHYT_RS00755 at 173.070 kb on - strand, within BPHYT_RS00755 at 173.070 kb on - strand, within BPHYT_RS00755 at 173.180 kb on + strand, within BPHYT_RS00755 at 173.372 kb on + strand, within BPHYT_RS00755 at 173.373 kb on - strand, within BPHYT_RS00755 at 173.446 kb on + strand, within BPHYT_RS00755 at 173.446 kb on + strand, within BPHYT_RS00755 at 173.447 kb on - strand, within BPHYT_RS00755 at 173.447 kb on - strand, within BPHYT_RS00755 at 173.643 kb on + strand, within BPHYT_RS00755 at 173.644 kb on - strand, within BPHYT_RS00755 at 174.023 kb on + strand, within BPHYT_RS00760 at 174.254 kb on + strand, within BPHYT_RS00760 at 174.254 kb on + strand, within BPHYT_RS00760 at 174.309 kb on - strand, within BPHYT_RS00760 at 174.336 kb on - strand, within BPHYT_RS00760 at 174.336 kb on - strand, within BPHYT_RS00760 at 174.515 kb on - strand, within BPHYT_RS00765 at 174.613 kb on + strand, within BPHYT_RS00765 at 174.614 kb on - strand, within BPHYT_RS00765 at 174.635 kb on + strand, within BPHYT_RS00765 at 174.806 kb on - strand, within BPHYT_RS00765 at 174.806 kb on - strand, within BPHYT_RS00765 at 174.935 kb on + strand, within BPHYT_RS00765 at 174.935 kb on + strand, within BPHYT_RS00765 at 174.936 kb on - strand, within BPHYT_RS00765 at 175.306 kb on + strand at 175.398 kb on + strand, within BPHYT_RS00770
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 172,830 + -0.4 172,830 + -0.1 172,830 + -0.7 173,069 + BPHYT_RS00755 0.12 -0.4 173,069 + BPHYT_RS00755 0.12 -0.1 173,069 + BPHYT_RS00755 0.12 -0.5 173,070 - BPHYT_RS00755 0.12 +0.6 173,070 - BPHYT_RS00755 0.12 -0.1 173,180 + BPHYT_RS00755 0.25 +0.0 173,372 + BPHYT_RS00755 0.47 +0.7 173,373 - BPHYT_RS00755 0.47 -0.3 173,446 + BPHYT_RS00755 0.55 +3.1 173,446 + BPHYT_RS00755 0.55 -0.6 173,447 - BPHYT_RS00755 0.55 +0.4 173,447 - BPHYT_RS00755 0.55 -0.0 173,643 + BPHYT_RS00755 0.78 +0.7 173,644 - BPHYT_RS00755 0.78 -0.7 174,023 + BPHYT_RS00760 0.33 +0.8 174,254 + BPHYT_RS00760 0.73 +0.0 174,254 + BPHYT_RS00760 0.73 -0.1 174,309 - BPHYT_RS00760 0.82 +0.2 174,336 - BPHYT_RS00760 0.87 -1.1 174,336 - BPHYT_RS00760 0.87 +0.7 174,515 - BPHYT_RS00765 0.16 +0.5 174,613 + BPHYT_RS00765 0.30 -0.4 174,614 - BPHYT_RS00765 0.30 +1.9 174,635 + BPHYT_RS00765 0.33 +0.2 174,806 - BPHYT_RS00765 0.59 +0.5 174,806 - BPHYT_RS00765 0.59 -0.3 174,935 + BPHYT_RS00765 0.78 +0.2 174,935 + BPHYT_RS00765 0.78 +0.6 174,936 - BPHYT_RS00765 0.78 +0.7 175,306 + -0.2 175,398 + BPHYT_RS00770 0.80 +2.4
Or see this region's nucleotide sequence