Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00650 and BPHYT_RS00655 are separated by 25 nucleotides BPHYT_RS00655 and BPHYT_RS00660 are separated by 2 nucleotides
BPHYT_RS00650: BPHYT_RS00650 - acyl-CoA ligase, at 153,915 to 155,534
_RS00650
BPHYT_RS00655: BPHYT_RS00655 - 3-oxoacyl-ACP synthase, at 155,560 to 156,507
_RS00655
BPHYT_RS00660: BPHYT_RS00660 - 3-oxoacyl-ACP synthase, at 156,510 to 157,532
_RS00660
Position (kb) 155
156
157 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 154.591 kb on + strand, within BPHYT_RS00650 at 154.591 kb on + strand, within BPHYT_RS00650 at 154.592 kb on - strand, within BPHYT_RS00650 at 154.667 kb on + strand, within BPHYT_RS00650 at 154.668 kb on - strand, within BPHYT_RS00650 at 154.678 kb on + strand, within BPHYT_RS00650 at 154.722 kb on - strand, within BPHYT_RS00650 at 155.007 kb on - strand, within BPHYT_RS00650 at 155.007 kb on - strand, within BPHYT_RS00650 at 155.008 kb on + strand, within BPHYT_RS00650 at 155.008 kb on + strand, within BPHYT_RS00650 at 155.008 kb on + strand, within BPHYT_RS00650 at 155.008 kb on + strand, within BPHYT_RS00650 at 155.009 kb on - strand, within BPHYT_RS00650 at 155.009 kb on - strand, within BPHYT_RS00650 at 155.009 kb on - strand, within BPHYT_RS00650 at 155.446 kb on + strand at 155.711 kb on + strand, within BPHYT_RS00655 at 155.711 kb on + strand, within BPHYT_RS00655 at 155.711 kb on + strand, within BPHYT_RS00655 at 155.711 kb on + strand, within BPHYT_RS00655 at 155.711 kb on + strand, within BPHYT_RS00655 at 155.711 kb on + strand, within BPHYT_RS00655 at 155.711 kb on + strand, within BPHYT_RS00655 at 155.711 kb on + strand, within BPHYT_RS00655 at 155.858 kb on + strand, within BPHYT_RS00655 at 155.859 kb on - strand, within BPHYT_RS00655 at 155.859 kb on - strand, within BPHYT_RS00655 at 155.909 kb on + strand, within BPHYT_RS00655 at 155.924 kb on + strand, within BPHYT_RS00655 at 156.268 kb on - strand, within BPHYT_RS00655 at 156.512 kb on - strand at 156.523 kb on + strand at 156.524 kb on - strand at 156.524 kb on - strand at 156.524 kb on - strand at 156.615 kb on + strand, within BPHYT_RS00660 at 156.615 kb on + strand, within BPHYT_RS00660 at 156.615 kb on + strand, within BPHYT_RS00660 at 156.648 kb on + strand, within BPHYT_RS00660 at 156.649 kb on - strand, within BPHYT_RS00660 at 156.649 kb on - strand, within BPHYT_RS00660 at 156.649 kb on - strand, within BPHYT_RS00660 at 156.652 kb on + strand, within BPHYT_RS00660 at 156.734 kb on + strand, within BPHYT_RS00660 at 156.734 kb on + strand, within BPHYT_RS00660 at 156.735 kb on - strand, within BPHYT_RS00660 at 156.869 kb on + strand, within BPHYT_RS00660 at 157.152 kb on + strand, within BPHYT_RS00660 at 157.298 kb on - strand, within BPHYT_RS00660 at 157.384 kb on + strand, within BPHYT_RS00660 at 157.385 kb on - strand, within BPHYT_RS00660 at 157.437 kb on + strand at 157.474 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 154,591 + BPHYT_RS00650 0.42 -1.7 154,591 + BPHYT_RS00650 0.42 -1.8 154,592 - BPHYT_RS00650 0.42 +0.9 154,667 + BPHYT_RS00650 0.46 +0.2 154,668 - BPHYT_RS00650 0.46 -0.2 154,678 + BPHYT_RS00650 0.47 +0.8 154,722 - BPHYT_RS00650 0.50 +0.1 155,007 - BPHYT_RS00650 0.67 +0.2 155,007 - BPHYT_RS00650 0.67 -0.4 155,008 + BPHYT_RS00650 0.67 -0.9 155,008 + BPHYT_RS00650 0.67 -0.6 155,008 + BPHYT_RS00650 0.67 -2.8 155,008 + BPHYT_RS00650 0.67 -0.5 155,009 - BPHYT_RS00650 0.68 +0.1 155,009 - BPHYT_RS00650 0.68 +0.8 155,009 - BPHYT_RS00650 0.68 -0.1 155,446 + -0.4 155,711 + BPHYT_RS00655 0.16 -0.8 155,711 + BPHYT_RS00655 0.16 +0.1 155,711 + BPHYT_RS00655 0.16 -0.6 155,711 + BPHYT_RS00655 0.16 -1.2 155,711 + BPHYT_RS00655 0.16 -1.5 155,711 + BPHYT_RS00655 0.16 -1.2 155,711 + BPHYT_RS00655 0.16 -0.9 155,711 + BPHYT_RS00655 0.16 -1.0 155,858 + BPHYT_RS00655 0.31 +0.1 155,859 - BPHYT_RS00655 0.32 -0.1 155,859 - BPHYT_RS00655 0.32 -0.6 155,909 + BPHYT_RS00655 0.37 -0.7 155,924 + BPHYT_RS00655 0.38 +1.1 156,268 - BPHYT_RS00655 0.75 -1.7 156,512 - +0.2 156,523 + -0.1 156,524 - -0.6 156,524 - +0.0 156,524 - -2.5 156,615 + BPHYT_RS00660 0.10 -0.6 156,615 + BPHYT_RS00660 0.10 -1.2 156,615 + BPHYT_RS00660 0.10 +0.2 156,648 + BPHYT_RS00660 0.13 -0.2 156,649 - BPHYT_RS00660 0.14 -1.1 156,649 - BPHYT_RS00660 0.14 -0.4 156,649 - BPHYT_RS00660 0.14 +0.3 156,652 + BPHYT_RS00660 0.14 -2.1 156,734 + BPHYT_RS00660 0.22 -0.1 156,734 + BPHYT_RS00660 0.22 -0.8 156,735 - BPHYT_RS00660 0.22 -0.9 156,869 + BPHYT_RS00660 0.35 +0.0 157,152 + BPHYT_RS00660 0.63 -1.5 157,298 - BPHYT_RS00660 0.77 -0.0 157,384 + BPHYT_RS00660 0.85 -0.1 157,385 - BPHYT_RS00660 0.86 -1.8 157,437 + +0.2 157,474 + -0.2
Or see this region's nucleotide sequence