Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00395 and BPHYT_RS00400 are separated by 510 nucleotides BPHYT_RS00400 and BPHYT_RS00405 are separated by 17 nucleotides BPHYT_RS00405 and BPHYT_RS00410 are separated by 27 nucleotides
BPHYT_RS00395: BPHYT_RS00395 - aldehyde dehydrogenase, at 99,091 to 100,518
_RS00395
BPHYT_RS00400: BPHYT_RS00400 - hypothetical protein, at 101,029 to 101,316
_RS00400
BPHYT_RS00405: BPHYT_RS00405 - hypothetical protein, at 101,334 to 101,687
_RS00405
BPHYT_RS00410: BPHYT_RS00410 - LacI family transcription regulator, at 101,715 to 102,809
_RS00410
Position (kb) 101
102 Strain fitness (log2 ratio) -1
0
1
2 at 100.250 kb on - strand, within BPHYT_RS00395 at 100.461 kb on - strand at 100.579 kb on - strand at 100.681 kb on - strand at 100.985 kb on - strand at 101.083 kb on - strand, within BPHYT_RS00400 at 101.132 kb on + strand, within BPHYT_RS00400 at 101.133 kb on - strand, within BPHYT_RS00400 at 101.177 kb on - strand, within BPHYT_RS00400 at 101.308 kb on - strand at 101.339 kb on + strand at 101.340 kb on - strand at 101.340 kb on - strand at 101.371 kb on + strand, within BPHYT_RS00405 at 101.372 kb on - strand, within BPHYT_RS00405 at 101.372 kb on - strand, within BPHYT_RS00405 at 101.373 kb on + strand, within BPHYT_RS00405 at 101.373 kb on + strand, within BPHYT_RS00405 at 101.373 kb on + strand, within BPHYT_RS00405 at 101.373 kb on + strand, within BPHYT_RS00405 at 101.374 kb on - strand, within BPHYT_RS00405 at 101.374 kb on - strand, within BPHYT_RS00405 at 101.374 kb on - strand, within BPHYT_RS00405 at 101.513 kb on + strand, within BPHYT_RS00405 at 101.513 kb on + strand, within BPHYT_RS00405 at 101.514 kb on - strand, within BPHYT_RS00405 at 101.615 kb on + strand, within BPHYT_RS00405 at 101.615 kb on + strand, within BPHYT_RS00405 at 101.615 kb on + strand, within BPHYT_RS00405 at 101.616 kb on - strand, within BPHYT_RS00405 at 101.616 kb on - strand, within BPHYT_RS00405 at 102.066 kb on + strand, within BPHYT_RS00410 at 102.268 kb on + strand, within BPHYT_RS00410 at 102.272 kb on + strand, within BPHYT_RS00410 at 102.272 kb on + strand, within BPHYT_RS00410 at 102.273 kb on - strand, within BPHYT_RS00410 at 102.273 kb on - strand, within BPHYT_RS00410 at 102.273 kb on - strand, within BPHYT_RS00410
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 100,250 - BPHYT_RS00395 0.81 +1.1 100,461 - -0.9 100,579 - -0.2 100,681 - -0.0 100,985 - -0.3 101,083 - BPHYT_RS00400 0.19 +0.6 101,132 + BPHYT_RS00400 0.36 -1.7 101,133 - BPHYT_RS00400 0.36 -0.8 101,177 - BPHYT_RS00400 0.51 -0.9 101,308 - -0.4 101,339 + +1.2 101,340 - -0.5 101,340 - -0.3 101,371 + BPHYT_RS00405 0.10 +0.6 101,372 - BPHYT_RS00405 0.11 +0.1 101,372 - BPHYT_RS00405 0.11 +2.0 101,373 + BPHYT_RS00405 0.11 -0.5 101,373 + BPHYT_RS00405 0.11 -0.5 101,373 + BPHYT_RS00405 0.11 -1.0 101,373 + BPHYT_RS00405 0.11 -1.4 101,374 - BPHYT_RS00405 0.11 -0.4 101,374 - BPHYT_RS00405 0.11 -0.1 101,374 - BPHYT_RS00405 0.11 -0.6 101,513 + BPHYT_RS00405 0.51 +0.7 101,513 + BPHYT_RS00405 0.51 -0.0 101,514 - BPHYT_RS00405 0.51 -0.1 101,615 + BPHYT_RS00405 0.79 +0.1 101,615 + BPHYT_RS00405 0.79 +0.5 101,615 + BPHYT_RS00405 0.79 -0.7 101,616 - BPHYT_RS00405 0.80 -0.2 101,616 - BPHYT_RS00405 0.80 +0.2 102,066 + BPHYT_RS00410 0.32 -0.2 102,268 + BPHYT_RS00410 0.51 -0.8 102,272 + BPHYT_RS00410 0.51 +0.1 102,272 + BPHYT_RS00410 0.51 -0.9 102,273 - BPHYT_RS00410 0.51 +1.2 102,273 - BPHYT_RS00410 0.51 -1.1 102,273 - BPHYT_RS00410 0.51 -0.5
Or see this region's nucleotide sequence