Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS00275

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
69,286	+		BPHYT_RS00265	0.89	-2.4
69,315	-				-1.5
69,315	-				-1.0
69,453	+				-0.2
69,453	+				+0.4
69,454	-				-0.5
69,455	+				-0.0
69,456	-				-0.6
69,525	-				-0.7
69,732	-		BPHYT_RS00270	0.35	+1.0
69,732	-		BPHYT_RS00270	0.35	+0.5
70,094	+		BPHYT_RS00270	0.87	-1.1
70,095	-		BPHYT_RS00270	0.87	-0.9
70,306	+		BPHYT_RS00275	0.12	-0.1
70,307	-		BPHYT_RS00275	0.12	-3.2
70,460	-		BPHYT_RS00275	0.34	+0.3
70,460	-		BPHYT_RS00275	0.34	+1.2
70,460	-		BPHYT_RS00275	0.34	-0.2
70,607	+		BPHYT_RS00275	0.56	-0.4
70,608	-		BPHYT_RS00275	0.56	-0.1
70,683	-		BPHYT_RS00275	0.67	+0.1
70,772	+		BPHYT_RS00275	0.80	+0.8
70,772	+		BPHYT_RS00275	0.80	-0.7
70,772	+		BPHYT_RS00275	0.80	-0.3
70,773	-		BPHYT_RS00275	0.80	+0.3
70,908	+				-1.4
70,908	+				-2.8
70,909	-				+0.3
70,909	-				-0.2
70,909	-				-1.2
70,909	-				+0.6
70,941	-				-1.2
71,200	+		BPHYT_RS00280	0.17	+0.9
71,200	+		BPHYT_RS00280	0.17	+0.9
71,733	-		BPHYT_RS00280	0.48	+1.7
71,733	-		BPHYT_RS00280	0.48	-0.4
71,842	+		BPHYT_RS00280	0.54	+0.0
71,842	+		BPHYT_RS00280	0.54	+0.1
71,843	-				-0.9