Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00160 and BPHYT_RS00165 are separated by 131 nucleotides BPHYT_RS00165 and BPHYT_RS00170 are separated by 22 nucleotides
BPHYT_RS00160: BPHYT_RS00160 - ABC transporter substrate-binding protein, at 43,261 to 44,049
_RS00160
BPHYT_RS00165: BPHYT_RS00165 - AraC family transcriptional regulator, at 44,181 to 45,026
_RS00165
BPHYT_RS00170: BPHYT_RS00170 - lysine transporter LysE, at 45,049 to 45,636
_RS00170
Position (kb) 45
46 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 44.059 kb on + strand at 44.059 kb on + strand at 44.129 kb on + strand at 44.130 kb on - strand at 44.133 kb on + strand at 44.155 kb on + strand at 44.163 kb on + strand at 44.178 kb on + strand at 44.302 kb on - strand, within BPHYT_RS00165 at 44.362 kb on - strand, within BPHYT_RS00165 at 44.847 kb on + strand, within BPHYT_RS00165 at 44.868 kb on + strand, within BPHYT_RS00165 at 44.868 kb on + strand, within BPHYT_RS00165 at 44.893 kb on - strand, within BPHYT_RS00165 at 44.893 kb on - strand, within BPHYT_RS00165 at 45.016 kb on - strand at 45.065 kb on + strand at 45.200 kb on + strand, within BPHYT_RS00170 at 45.201 kb on - strand, within BPHYT_RS00170 at 45.315 kb on - strand, within BPHYT_RS00170 at 45.380 kb on + strand, within BPHYT_RS00170 at 45.390 kb on - strand, within BPHYT_RS00170 at 45.571 kb on - strand at 45.571 kb on - strand, within BPHYT_RS00170 at 45.625 kb on + strand at 45.626 kb on - strand at 45.626 kb on - strand at 45.626 kb on - strand at 45.650 kb on - strand at 45.706 kb on - strand at 45.706 kb on - strand at 45.855 kb on - strand at 45.995 kb on + strand at 46.036 kb on + strand at 46.042 kb on - strand at 46.085 kb on + strand at 46.086 kb on - strand at 46.106 kb on + strand at 46.107 kb on - strand at 46.125 kb on + strand at 46.136 kb on - strand at 46.137 kb on + strand at 46.138 kb on - strand at 46.138 kb on - strand at 46.146 kb on + strand at 46.156 kb on - strand at 46.187 kb on + strand at 46.359 kb on - strand at 46.376 kb on + strand at 46.377 kb on - strand at 46.383 kb on - strand at 46.401 kb on + strand at 46.401 kb on + strand at 46.401 kb on + strand at 46.401 kb on + strand at 46.471 kb on + strand at 46.567 kb on + strand at 46.567 kb on + strand at 46.603 kb on + strand at 46.603 kb on + strand at 46.604 kb on - strand at 46.604 kb on - strand at 46.604 kb on - strand at 46.604 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 44,059 + -0.4 44,059 + -0.2 44,129 + +0.3 44,130 - +0.1 44,133 + -0.6 44,155 + -0.6 44,163 + +0.1 44,178 + -0.0 44,302 - BPHYT_RS00165 0.14 -2.1 44,362 - BPHYT_RS00165 0.21 -0.5 44,847 + BPHYT_RS00165 0.79 -0.5 44,868 + BPHYT_RS00165 0.81 +3.8 44,868 + BPHYT_RS00165 0.81 -0.1 44,893 - BPHYT_RS00165 0.84 +0.9 44,893 - BPHYT_RS00165 0.84 +0.7 45,016 - -1.5 45,065 + -0.5 45,200 + BPHYT_RS00170 0.26 -0.1 45,201 - BPHYT_RS00170 0.26 -0.2 45,315 - BPHYT_RS00170 0.45 -1.6 45,380 + BPHYT_RS00170 0.56 +0.3 45,390 - BPHYT_RS00170 0.58 +0.1 45,571 - -0.5 45,571 - BPHYT_RS00170 0.89 -0.7 45,625 + -0.4 45,626 - +0.3 45,626 - +0.3 45,626 - -0.4 45,650 - +1.0 45,706 - -1.7 45,706 - +0.7 45,855 - -1.5 45,995 + +0.1 46,036 + +1.4 46,042 - -0.8 46,085 + +0.4 46,086 - +0.1 46,106 + +2.7 46,107 - -0.8 46,125 + -0.5 46,136 - +1.9 46,137 + -0.6 46,138 - +0.7 46,138 - +0.7 46,146 + -0.8 46,156 - +1.6 46,187 + -1.5 46,359 - -0.4 46,376 + -0.6 46,377 - -0.7 46,383 - +0.4 46,401 + +0.3 46,401 + +3.1 46,401 + -0.3 46,401 + +0.2 46,471 + -0.3 46,567 + +0.2 46,567 + +0.5 46,603 + -0.5 46,603 + +0.1 46,604 - -1.1 46,604 - +1.5 46,604 - -0.8 46,604 - +0.1
Or see this region's nucleotide sequence