Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00120 and BPHYT_RS00125 are separated by 334 nucleotides BPHYT_RS00125 and BPHYT_RS00130 are separated by 43 nucleotides
BPHYT_RS00120: BPHYT_RS00120 - aldehyde dehydrogenase, at 34,086 to 35,606
_RS00120
BPHYT_RS00125: BPHYT_RS00125 - AraC family transcriptional regulator, at 35,941 to 36,990
_RS00125
BPHYT_RS00130: BPHYT_RS00130 - ATPase P, at 37,034 to 39,139
_RS00130
Position (kb) 35
36
37 Strain fitness (log2 ratio) -2
-1
0
1 at 35.161 kb on + strand, within BPHYT_RS00120 at 35.524 kb on - strand at 35.637 kb on - strand at 35.637 kb on - strand at 35.638 kb on + strand at 35.650 kb on + strand at 35.651 kb on - strand at 35.652 kb on + strand at 35.653 kb on - strand at 35.721 kb on + strand at 35.722 kb on - strand at 35.722 kb on - strand at 35.722 kb on - strand at 35.741 kb on + strand at 35.741 kb on + strand at 35.741 kb on + strand at 35.742 kb on - strand at 36.073 kb on + strand, within BPHYT_RS00125 at 36.254 kb on + strand, within BPHYT_RS00125 at 36.255 kb on - strand, within BPHYT_RS00125 at 36.255 kb on - strand, within BPHYT_RS00125 at 36.647 kb on - strand, within BPHYT_RS00125 at 36.717 kb on + strand, within BPHYT_RS00125 at 36.753 kb on - strand, within BPHYT_RS00125 at 36.766 kb on + strand, within BPHYT_RS00125 at 36.766 kb on + strand, within BPHYT_RS00125 at 36.767 kb on - strand, within BPHYT_RS00125 at 36.767 kb on - strand, within BPHYT_RS00125 at 37.070 kb on + strand at 37.403 kb on + strand, within BPHYT_RS00130 at 37.404 kb on - strand, within BPHYT_RS00130 at 37.724 kb on + strand, within BPHYT_RS00130 at 37.724 kb on + strand, within BPHYT_RS00130 at 37.986 kb on + strand, within BPHYT_RS00130
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 35,161 + BPHYT_RS00120 0.71 -1.9 35,524 - -0.7 35,637 - -0.9 35,637 - -0.4 35,638 + +0.1 35,650 + -0.3 35,651 - +1.0 35,652 + -2.0 35,653 - -0.5 35,721 + -0.2 35,722 - -0.0 35,722 - +0.4 35,722 - +0.6 35,741 + +1.0 35,741 + -0.3 35,741 + -1.2 35,742 - +0.4 36,073 + BPHYT_RS00125 0.13 -2.1 36,254 + BPHYT_RS00125 0.30 +0.1 36,255 - BPHYT_RS00125 0.30 -0.5 36,255 - BPHYT_RS00125 0.30 +0.3 36,647 - BPHYT_RS00125 0.67 -0.2 36,717 + BPHYT_RS00125 0.74 +0.6 36,753 - BPHYT_RS00125 0.77 +0.1 36,766 + BPHYT_RS00125 0.79 -0.2 36,766 + BPHYT_RS00125 0.79 -0.5 36,767 - BPHYT_RS00125 0.79 -1.4 36,767 - BPHYT_RS00125 0.79 -1.2 37,070 + +0.2 37,403 + BPHYT_RS00130 0.18 +0.3 37,404 - BPHYT_RS00130 0.18 -0.2 37,724 + BPHYT_RS00130 0.33 +0.5 37,724 + BPHYT_RS00130 0.33 -1.3 37,986 + BPHYT_RS00130 0.45 -0.6
Or see this region's nucleotide sequence