Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3488

Experiment: Chondroitin sulfate A from bovine trachea; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Chondroitin sulfate A from bovine trachea; filtered 2.5 mg/ml (C)
4,497,170	-		BT3487	0.45	-1.1
4,497,419	-		BT3487	0.59	-1.0
4,497,529	-		BT3487	0.66	-2.0
4,497,529	-		BT3487	0.66	-0.6
4,497,549	+		BT3487	0.67	+0.4
4,497,573	-		BT3487	0.69	-1.0
4,497,724	-		BT3487	0.78	-2.8
4,497,754	+		BT3487	0.79	-0.0
4,497,754	+		BT3487	0.79	-1.8
4,497,755	-		BT3487	0.79	+2.3
4,497,757	-		BT3487	0.79	-1.8
4,497,777	-		BT3487	0.81	-1.1
4,497,869	+		BT3487	0.86	-0.0
4,497,994	+				-1.6
4,498,071	+				-1.0
4,498,071	+				-1.0
4,498,209	-				-1.5
4,498,233	+				-2.2
4,498,286	-				-1.0
4,498,286	-				-1.6
4,498,305	-		BT3488	0.11	-1.0
4,498,354	-		BT3488	0.14	-0.0
4,498,443	+		BT3488	0.20	-1.0
4,498,445	+		BT3488	0.20	-0.3
4,498,446	-		BT3488	0.20	-2.3
4,498,508	+		BT3488	0.24	-2.0
4,498,513	-		BT3488	0.24	-2.7
4,498,515	-		BT3488	0.24	-0.0
4,498,515	-		BT3488	0.24	-0.3
4,498,588	-		BT3488	0.29	-2.1
4,498,683	+		BT3488	0.35	-0.7
4,498,684	-		BT3488	0.35	-1.6
4,498,684	-		BT3488	0.35	+0.6
4,498,716	-		BT3488	0.37	+2.0
4,498,811	+		BT3488	0.43	-3.4
4,498,812	-		BT3488	0.43	+1.0
4,499,022	+		BT3488	0.57	-3.3
4,499,023	-		BT3488	0.57	-0.0
4,499,064	-		BT3488	0.59	+1.0
4,499,076	-		BT3488	0.60	-2.3
4,499,213	+		BT3488	0.69	-0.4
4,499,214	-		BT3488	0.69	-2.8
4,499,248	-		BT3488	0.71	-0.9
4,499,273	+		BT3488	0.73	+0.6
4,499,395	-		BT3488	0.80	-0.7
4,499,478	+		BT3488	0.86	-1.0
4,499,478	+		BT3488	0.86	-1.0
4,499,485	-		BT3488	0.86	-0.0
4,499,568	+				-1.6
4,499,627	-				-3.6
4,499,715	+				-1.9
4,499,860	-		BT3489	0.10	-1.8
4,499,902	-		BT3489	0.13	-1.0
4,499,985	+		BT3489	0.19	-1.0
4,500,076	+		BT3489	0.26	-2.0
4,500,077	-		BT3489	0.26	+1.6
4,500,112	+		BT3489	0.29	-1.0
4,500,197	-		BT3489	0.35	+1.6
4,500,260	-		BT3489	0.39	-1.0
4,500,298	+		BT3489	0.42	-1.3
4,500,302	+		BT3489	0.42	-0.0
4,500,329	+		BT3489	0.44	-1.6
4,500,330	-		BT3489	0.45	+1.0
4,500,330	-		BT3489	0.45	-0.0
4,500,330	-		BT3489	0.45	-0.8
4,500,334	-		BT3489	0.45	-2.9
4,500,338	+		BT3489	0.45	-2.0
4,500,340	+				+0.6
4,500,381	+		BT3489	0.48	-1.0
4,500,381	+		BT3489	0.48	-1.8
4,500,440	+		BT3489	0.53	-0.0
4,500,441	-		BT3489	0.53	-1.6
4,500,466	+		BT3489	0.54	-2.3
4,500,517	+		BT3489	0.58	-1.7
4,500,666	-		BT3489	0.69	-1.0