Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3486

Experiment: Chondroitin sulfate A from bovine trachea; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Chondroitin sulfate A from bovine trachea; filtered 2.5 mg/ml (C)
4,494,053	+		BT3485	0.26	+1.0
4,494,064	-		BT3485	0.27	-1.6
4,494,076	+		BT3485	0.28	-0.0
4,494,084	+		BT3485	0.29	-0.6
4,494,087	+		BT3485	0.29	+1.0
4,494,249	+		BT3485	0.45	-2.6
4,494,250	-		BT3485	0.45	-1.5
4,494,251	+		BT3485	0.45	+1.6
4,494,313	-		BT3485	0.51	-0.6
4,494,394	+		BT3485	0.59	-1.6
4,494,418	+		BT3485	0.61	-1.6
4,494,433	-		BT3485	0.63	+1.0
4,494,532	+		BT3485	0.72	-1.7
4,494,610	-		BT3485	0.80	-0.0
4,494,611	+		BT3485	0.80	-1.6
4,494,612	-		BT3485	0.80	-0.9
4,494,612	-		BT3485	0.80	-0.0
4,494,617	-		BT3485	0.80	-1.2
4,494,657	-		BT3485	0.84	-0.2
4,494,672	-		BT3485	0.86	-1.7
4,494,677	+		BT3485	0.86	-2.3
4,494,736	+				-1.6
4,494,740	-				-0.2
4,494,778	+				-2.0
4,494,864	+				-0.8
4,494,865	-				-0.6
4,494,872	-				-1.6
4,494,933	+				-0.0
4,494,941	-				-0.3
4,494,944	+				-0.0
4,494,994	+				-2.8
4,495,040	-				-1.6
4,495,044	-				-0.0
4,495,123	+				-0.0
4,495,154	-				-0.4
4,495,160	+				+1.0
4,495,240	-		BT3486	0.14	-1.7
4,495,347	-		BT3486	0.22	-0.6
4,495,392	-		BT3486	0.26	-0.6
4,495,560	-		BT3486	0.38	-3.0
4,495,560	-		BT3486	0.38	+1.0
4,495,568	-		BT3486	0.38	-1.0
4,495,589	-		BT3486	0.40	-0.7
4,495,623	-		BT3486	0.43	-1.1
4,495,629	-		BT3486	0.43	-0.6
4,495,641	-		BT3486	0.44	-0.8
4,495,689	-		BT3486	0.47	-0.7
4,495,695	-		BT3486	0.48	-0.0
4,495,851	-		BT3486	0.59	-2.6
4,495,967	+		BT3486	0.68	-0.6
4,496,008	+		BT3486	0.71	+1.0
4,496,025	+		BT3486	0.72	-1.3
4,496,026	-		BT3486	0.72	-1.0
4,496,072	+		BT3486	0.75	-0.7
4,496,195	+		BT3486	0.85	-0.9
4,496,269	+				+1.0
4,496,270	-				-1.9
4,496,271	+				-1.0
4,496,277	-				-1.4
4,496,309	-				-1.0
4,496,512	+				+1.0
4,496,543	+				-2.8
4,496,578	+				-0.0
4,496,585	-				-2.7
4,496,614	-		BT3487	0.12	+1.6
4,496,630	+		BT3487	0.13	-1.9
4,496,644	+		BT3487	0.13	-1.3
4,496,806	+		BT3487	0.23	-2.0
4,496,807	-		BT3487	0.23	-1.3
4,496,880	-		BT3487	0.27	-2.0
4,496,902	-		BT3487	0.29	-0.7
4,496,902	-		BT3487	0.29	-0.7
4,496,951	+		BT3487	0.32	-1.9
4,496,962	-		BT3487	0.32	-0.5
4,497,027	-		BT3487	0.36	-0.6
4,497,030	-		BT3487	0.36	-1.0
4,497,032	-		BT3487	0.36	-1.8
4,497,032	-		BT3487	0.36	+2.8
4,497,070	-		BT3487	0.39	-1.6
4,497,108	-		BT3487	0.41	-0.0
4,497,108	-		BT3487	0.41	+1.0
4,497,170	-		BT3487	0.45	-1.1