Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3349

Experiment: Chondroitin sulfate A from bovine trachea; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Chondroitin sulfate A from bovine trachea; filtered 2.5 mg/ml (C)
4,316,582	+		BT3348	0.27	-1.0
4,316,611	+		BT3348	0.30	-4.6
4,316,627	+		BT3348	0.31	+0.0
4,316,679	+		BT3348	0.35	-2.3
4,316,680	-		BT3348	0.35	+0.0
4,316,801	-		BT3348	0.45	-2.8
4,316,801	-		BT3348	0.45	-1.0
4,316,801	-		BT3348	0.45	-2.8
4,316,859	-		BT3348	0.50	-1.6
4,316,859	-		BT3348	0.50	-3.4
4,316,863	+		BT3348	0.51	-1.0
4,316,924	+		BT3348	0.56	-3.8
4,316,925	-		BT3348	0.56	+0.0
4,316,934	+		BT3348	0.56	-4.6
4,316,962	-		BT3348	0.59	-4.2
4,316,962	-		BT3348	0.59	-3.4
4,316,965	+		BT3348	0.59	-3.4
4,317,033	-		BT3348	0.65	-3.0
4,317,039	-		BT3348	0.65	-2.6
4,317,075	-		BT3348	0.68	-1.0
4,317,099	-		BT3348	0.70	-4.8
4,317,099	-		BT3348	0.70	-3.6
4,317,119	-		BT3348	0.72	-4.4
4,317,208	+		BT3348	0.79	-1.0
4,317,260	-		BT3348	0.84	-1.0
4,317,274	+		BT3348	0.85	-2.0
4,317,354	+				-1.6
4,317,381	+				-1.0
4,317,382	-				-3.0
4,317,456	-				-3.0
4,317,495	-				-2.0
4,317,496	+				-1.0
4,317,497	-				-2.7
4,317,497	-				-3.3
4,317,497	-				-2.0
4,317,499	+				-1.0
4,317,499	+				-2.0
4,317,517	+				-1.9
4,317,518	-				-1.6
4,317,531	+				-3.2
4,317,534	-				-2.0
4,317,599	+				-4.2
4,317,648	+				-3.9
4,317,648	+				-4.7
4,317,743	+		BT3349	0.12	-4.2
4,317,749	+		BT3349	0.12	-2.3
4,317,754	+		BT3349	0.12	-2.8
4,317,845	+		BT3349	0.18	-3.7
4,318,025	+		BT3349	0.30	-5.0
4,318,026	+		BT3349	0.30	-3.6
4,318,026	+		BT3349	0.30	-0.6
4,318,093	-		BT3349	0.35	-1.6
4,318,093	-		BT3349	0.35	-2.3
4,318,099	-		BT3349	0.35	-2.8
4,318,124	+		BT3349	0.37	-2.6
4,318,328	-		BT3349	0.50	-3.7
4,318,986	-				+0.0
4,319,052	+				-2.4
4,319,080	+				-1.0
4,319,081	-				-2.3
4,319,081	-				-1.0
4,319,081	-				-2.1
4,319,092	-				-2.4
4,319,097	-				-2.4
4,319,097	-				-2.0
4,319,097	-				+0.0
4,319,102	-				-1.0
4,319,102	-				+0.0
4,319,104	+				-1.6
4,319,114	-				-1.9
4,319,131	+				+0.0
4,319,132	-				-1.0
4,319,135	+				-1.6
4,319,222	-				+0.0
4,319,294	-				-1.0
4,319,294	-				-2.0
4,319,294	-				+0.0
4,319,477	+				-0.6
4,319,478	-				+0.0
4,319,489	-				-3.0
4,319,489	-				-2.3
4,319,490	+				-2.0
4,319,490	+				-3.2
4,319,492	+				-1.0
4,319,533	+		BT3350	0.11	-3.0
4,319,538	-		BT3350	0.11	-2.0
4,319,557	-		BT3350	0.11	-2.3
4,319,569	-		BT3350	0.12	-2.4
4,319,569	-		BT3350	0.12	-2.7
4,319,617	-		BT3350	0.14	-1.0
4,319,646	-		BT3350	0.15	-2.0
4,319,807	-		BT3350	0.20	-1.0
4,319,829	+		BT3350	0.21	-1.6
4,319,829	+		BT3350	0.21	+1.0