Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3487

Experiment: Chondroitin sulfate A from bovine trachea; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Chondroitin sulfate A from bovine trachea; filtered 2.5 mg/ml (C)
4,495,560	-		BT3486	0.38	-2.0
4,495,560	-		BT3486	0.38	+0.6
4,495,568	-		BT3486	0.38	-1.0
4,495,589	-		BT3486	0.40	-1.3
4,495,623	-		BT3486	0.43	-1.1
4,495,629	-		BT3486	0.43	-1.0
4,495,641	-		BT3486	0.44	+0.4
4,495,689	-		BT3486	0.47	-1.3
4,495,695	-		BT3486	0.48	+0.6
4,495,851	-		BT3486	0.59	-2.6
4,495,967	+		BT3486	0.68	+0.2
4,496,008	+		BT3486	0.71	-0.0
4,496,025	+		BT3486	0.72	-0.0
4,496,026	-		BT3486	0.72	-0.0
4,496,072	+		BT3486	0.75	+0.3
4,496,195	+		BT3486	0.85	-1.6
4,496,269	+				+1.0
4,496,270	-				-1.5
4,496,271	+				-2.0
4,496,277	-				-3.0
4,496,309	-				-1.0
4,496,512	+				-0.0
4,496,543	+				-0.4
4,496,578	+				-0.0
4,496,585	-				-1.8
4,496,614	-		BT3487	0.12	+1.0
4,496,630	+		BT3487	0.13	-0.9
4,496,644	+		BT3487	0.13	-1.7
4,496,806	+		BT3487	0.23	-1.7
4,496,807	-		BT3487	0.23	+0.5
4,496,880	-		BT3487	0.27	-2.0
4,496,902	-		BT3487	0.29	-1.3
4,496,902	-		BT3487	0.29	-2.3
4,496,951	+		BT3487	0.32	-0.5
4,496,962	-		BT3487	0.32	-0.5
4,497,027	-		BT3487	0.36	-1.6
4,497,030	-		BT3487	0.36	-1.0
4,497,032	-		BT3487	0.36	-1.7
4,497,032	-		BT3487	0.36	+1.6
4,497,070	-		BT3487	0.39	-1.6
4,497,108	-		BT3487	0.41	-0.0
4,497,108	-		BT3487	0.41	+1.0
4,497,170	-		BT3487	0.45	-1.5
4,497,419	-		BT3487	0.59	+1.3
4,497,529	-		BT3487	0.66	-2.0
4,497,529	-		BT3487	0.66	-0.6
4,497,549	+		BT3487	0.67	-1.3
4,497,573	-		BT3487	0.69	-1.0
4,497,724	-		BT3487	0.78	-0.8
4,497,754	+		BT3487	0.79	+1.6
4,497,754	+		BT3487	0.79	-0.8
4,497,755	-		BT3487	0.79	+2.0
4,497,757	-		BT3487	0.79	-1.8
4,497,777	-		BT3487	0.81	-1.5
4,497,869	+		BT3487	0.86	+1.0
4,497,994	+				-0.6
4,498,071	+				-1.0
4,498,071	+				-1.0
4,498,209	-				-1.0
4,498,233	+				-2.2
4,498,286	-				-1.0
4,498,286	-				-0.0
4,498,305	-		BT3488	0.11	+1.0
4,498,354	-		BT3488	0.14	+2.0
4,498,443	+		BT3488	0.20	-1.0
4,498,445	+		BT3488	0.20	-1.6
4,498,446	-		BT3488	0.20	-1.3
4,498,508	+		BT3488	0.24	-1.0
4,498,513	-		BT3488	0.24	-1.7
4,498,515	-		BT3488	0.24	-0.0
4,498,515	-		BT3488	0.24	-1.0
4,498,588	-		BT3488	0.29	-1.1
4,498,683	+		BT3488	0.35	-1.3
4,498,684	-		BT3488	0.35	-1.6
4,498,684	-		BT3488	0.35	-0.0
4,498,716	-		BT3488	0.37	+1.0
4,498,811	+		BT3488	0.43	-3.4
4,498,812	-		BT3488	0.43	-0.0
4,499,022	+		BT3488	0.57	-0.5
4,499,023	-		BT3488	0.57	-0.0
4,499,064	-		BT3488	0.59	-0.0
4,499,076	-		BT3488	0.60	-2.3