Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3081

Experiment: Chondroitin sulfate A from bovine trachea; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Chondroitin sulfate A from bovine trachea; filtered 2.5 mg/ml (C)
3,905,260	-				-0.8
3,905,300	-		BT3080	0.13	-1.6
3,905,300	-		BT3080	0.13	-1.6
3,905,319	+		BT3080	0.15	+1.0
3,905,320	-		BT3080	0.15	-1.9
3,905,418	-		BT3080	0.26	-1.8
3,905,508	+		BT3080	0.35	-0.8
3,905,565	-		BT3080	0.41	-1.6
3,905,584	-		BT3080	0.43	-0.6
3,905,628	+		BT3080	0.48	-0.3
3,905,649	+		BT3080	0.50	-0.8
3,905,689	-		BT3080	0.54	-1.2
3,905,693	+		BT3080	0.55	-0.8
3,905,852	-		BT3080	0.71	-1.1
3,905,891	+		BT3080	0.76	-1.2
3,905,985	+		BT3080	0.85	-0.1
3,906,050	+				-1.0
3,906,050	+				-2.4
3,906,056	-				+1.0
3,906,059	+				-0.6
3,906,060	-				-0.9
3,906,060	-				-0.8
3,906,060	-				-0.7
3,906,083	+				-1.2
3,906,084	-				-0.6
3,906,123	-				+1.6
3,906,124	+				-0.5
3,906,124	+				-0.9
3,906,125	-				+0.3
3,906,197	-				-1.8
3,906,198	+				-2.3
3,906,199	-				-1.6
3,906,199	-				+2.0
3,906,235	-				-1.4
3,906,235	-				-1.0
3,906,251	+				-1.0
3,906,252	-				-1.7
3,906,290	-		BT3081	0.12	-2.8
3,906,295	+		BT3081	0.13	-1.2
3,906,340	+		BT3081	0.26	-1.0
3,906,340	+		BT3081	0.26	-1.0
3,906,340	+		BT3081	0.26	-1.6
3,906,340	+		BT3081	0.26	-1.0
3,906,340	+		BT3081	0.26	-1.3
3,906,340	+		BT3081	0.26	+0.0
3,906,340	+		BT3081	0.26	-0.7
3,906,341	-		BT3081	0.27	-0.5
3,906,341	-		BT3081	0.27	+0.0
3,906,341	-		BT3081	0.27	+0.4
3,906,344	+		BT3081	0.27	-1.5
3,906,348	-				+0.0
3,906,368	-		BT3081	0.35	-0.6
3,906,368	-		BT3081	0.35	-0.8
3,906,368	-		BT3081	0.35	+0.0
3,906,416	+		BT3081	0.49	+0.5
3,906,416	+		BT3081	0.49	-0.8
3,906,416	+		BT3081	0.49	-0.6
3,906,434	+		BT3081	0.54	+0.0
3,906,451	-		BT3081	0.59	+0.0
3,906,451	-		BT3081	0.59	+0.1
3,906,592	-				+2.0
3,906,608	-				+0.6
3,906,759	+				-2.0
3,906,759	+				-1.2
3,906,759	+				-0.8
3,906,760	-				+0.0
3,906,776	-				-3.5
3,906,779	+				+0.4
3,906,779	+				+0.0
3,906,779	+				+0.6
3,906,788	-				-0.8
3,906,804	+				-2.0
3,906,805	-				+1.0
3,906,808	+				-0.7
3,906,978	+		BT3082	0.20	-1.0
3,906,978	+		BT3082	0.20	-1.0
3,906,978	+		BT3082	0.20	-0.6
3,906,979	-		BT3082	0.20	+0.0
3,907,042	+		BT3082	0.24	-2.0
3,907,043	-		BT3082	0.24	-1.1
3,907,043	-		BT3082	0.24	-2.2
3,907,043	-		BT3082	0.24	-0.9
3,907,102	+		BT3082	0.28	-1.9
3,907,178	+		BT3082	0.32	-1.4
3,907,187	-		BT3082	0.33	-1.6
3,907,187	-		BT3082	0.33	-1.6
3,907,233	+		BT3082	0.36	-0.6
3,907,233	+		BT3082	0.36	-3.2
3,907,237	+		BT3082	0.36	+1.0
3,907,238	-		BT3082	0.36	-0.9
3,907,249	+		BT3082	0.37	-1.8
3,907,250	-		BT3082	0.37	+2.0
3,907,250	-				-0.2
3,907,258	-		BT3082	0.37	-1.2
3,907,280	+		BT3082	0.39	-1.0
3,907,281	-		BT3082	0.39	-1.5
3,907,301	+		BT3082	0.40	+1.0
3,907,301	+		BT3082	0.40	-1.0
3,907,302	-		BT3082	0.40	-0.3
3,907,302	-		BT3082	0.40	-0.6
3,907,306	+		BT3082	0.40	-0.8
3,907,306	+		BT3082	0.40	-1.0
3,907,306	+		BT3082	0.40	-1.3
3,907,309	-		BT3082	0.40	+0.0
3,907,309	-		BT3082	0.40	-1.7
3,907,312	+		BT3082	0.41	+1.6
3,907,312	+		BT3082	0.41	-1.0
3,907,313	-		BT3082	0.41	+0.0
3,907,313	-		BT3082	0.41	-2.8
3,907,326	+		BT3082	0.41	-1.0
3,907,326	+		BT3082	0.41	-0.7
3,907,326	+		BT3082	0.41	-0.5
3,907,327	-		BT3082	0.41	-0.8
3,907,327	-		BT3082	0.41	+0.0
3,907,417	-		BT3082	0.47	+0.0
3,907,446	+		BT3082	0.49	-2.4
3,907,481	+		BT3082	0.51	-3.1
3,907,579	-		BT3082	0.57	-1.0