Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3051

Experiment: Chondroitin sulfate A from bovine trachea; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Chondroitin sulfate A from bovine trachea; filtered 2.5 mg/ml (C)
3,868,898	+		BT3050	0.34	-1.3
3,868,899	-		BT3050	0.34	-1.3
3,868,901	-		BT3050	0.34	-1.7
3,868,990	+		BT3050	0.43	-0.6
3,869,000	-		BT3050	0.44	-1.2
3,869,034	+		BT3050	0.48	+0.3
3,869,035	-		BT3050	0.48	-1.3
3,869,035	-		BT3050	0.48	-1.8
3,869,039	-		BT3050	0.48	-0.4
3,869,049	-		BT3050	0.49	-1.6
3,869,080	-		BT3050	0.52	+0.0
3,869,140	+		BT3050	0.59	-1.6
3,869,158	+		BT3050	0.60	-1.0
3,869,162	+		BT3050	0.61	+0.0
3,869,402	+		BT3050	0.86	-0.6
3,869,434	-		BT3050	0.89	-0.4
3,869,447	+				-0.8
3,869,447	+				-3.1
3,869,452	-				+0.0
3,869,452	-				-0.6
3,869,459	-				-0.3
3,869,482	-				-1.0
3,869,517	-				-2.6
3,869,535	-				+1.6
3,869,539	+				-0.6
3,869,618	-				+0.0
3,869,676	+				-1.3
3,869,715	+				-0.7
3,869,744	-				+0.4
3,869,765	-				-1.0
3,869,789	+				-2.3
3,869,790	-				-1.0
3,869,826	+				-0.6
3,869,856	-				-0.3
3,869,856	-				+0.0
3,869,857	+				+0.8
3,869,858	-				-1.5
3,869,858	-				+1.0
3,869,858	-				-0.4
3,869,869	+				+0.0
3,869,882	-				-1.1
3,869,999	+				-1.2
3,870,009	+				-1.0
3,870,021	-		BT3051	0.10	-0.3
3,870,094	+		BT3051	0.15	+0.8
3,870,118	+		BT3051	0.16	+0.0
3,870,134	+		BT3051	0.17	-2.0
3,870,134	+		BT3051	0.17	-1.3
3,870,135	-		BT3051	0.17	-0.3
3,870,155	+		BT3051	0.19	-1.7
3,870,155	+		BT3051	0.19	-2.2
3,870,155	+		BT3051	0.19	+1.0
3,870,155	+		BT3051	0.19	+1.0
3,870,156	-		BT3051	0.19	-0.9
3,870,207	+		BT3051	0.22	-0.9
3,870,251	-		BT3051	0.25	-1.1
3,870,489	-		BT3051	0.40	+0.7
3,870,746	+		BT3051	0.57	-2.0
3,870,747	-		BT3051	0.57	-0.2
3,870,815	-		BT3051	0.61	-1.6
3,870,826	+		BT3051	0.62	+1.0
3,870,839	+		BT3051	0.63	+0.0
3,870,839	+		BT3051	0.63	-3.6
3,870,857	+		BT3051	0.64	-0.5
3,870,899	+		BT3051	0.66	+0.0
3,870,916	+		BT3051	0.68	-1.0
3,870,916	+		BT3051	0.68	-1.3
3,870,917	-		BT3051	0.68	-2.2
3,871,023	+		BT3051	0.74	-0.6
3,871,104	-		BT3051	0.80	-1.0
3,871,185	-		BT3051	0.85	-0.7
3,871,198	-		BT3051	0.86	-2.3
3,871,247	+		BT3051	0.89	-0.8
3,871,286	+				-0.7
3,871,302	-				-1.7
3,871,302	-				-1.6
3,871,302	-				-2.3
3,871,335	+				-1.0
3,871,363	+				-1.9
3,871,376	+				-1.0
3,871,412	-				-2.6
3,871,412	-				-0.6
3,871,414	+				-1.2
3,871,414	+				-2.5
3,871,414	+				-0.9
3,871,418	+				-1.6
3,871,465	+				-0.7
3,871,518	-				+0.2
3,871,617	+				+0.6
3,871,617	+				-0.9
3,871,619	+				-0.3
3,871,620	-				-1.7
3,871,633	+				+0.0
3,871,661	-				-2.3
3,871,682	+				-0.7
3,871,702	-				+0.5
3,871,704	+				-0.7
3,871,707	+				-1.9
3,871,727	-				-0.4
3,871,768	-				+1.6
3,871,771	-				-1.6
3,871,804	+				-1.0
3,871,836	+				+0.4
3,871,836	+				-1.0
3,871,874	-				+2.2
3,871,927	+				-0.9
3,871,954	+				-1.6
3,871,954	+				-1.6
3,871,955	-				-1.1
3,872,060	+				-1.6
3,872,060	+				-1.9
3,872,073	-				+0.0
3,872,201	-		BT3052	0.11	-2.2
3,872,236	+		BT3052	0.15	+0.0
3,872,312	-		BT3052	0.23	-2.6
3,872,412	+		BT3052	0.33	-1.5
3,872,412	+		BT3052	0.33	-1.0