Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1918

Experiment: Chondroitin sulfate A from bovine trachea; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Chondroitin sulfate A from bovine trachea; filtered 2.5 mg/ml (C)
2,406,812	+		BT1917	0.49	-0.8
2,406,871	+		BT1917	0.53	-1.4
2,406,909	+		BT1917	0.55	-2.0
2,406,909	+		BT1917	0.55	-2.4
2,406,944	+		BT1917	0.58	-1.0
2,406,952	-		BT1917	0.58	-2.0
2,406,964	+		BT1917	0.59	-2.0
2,406,965	-		BT1917	0.59	+0.6
2,407,136	+		BT1917	0.70	-0.0
2,407,190	+		BT1917	0.74	-0.1
2,407,191	-		BT1917	0.74	-0.7
2,407,191	-		BT1917	0.74	-1.6
2,407,284	+		BT1917	0.80	+0.2
2,407,287	-		BT1917	0.80	-0.0
2,407,287	-		BT1917	0.80	-0.0
2,407,583	+				-1.0
2,407,594	-				-0.0
2,407,594	-				+0.4
2,407,594	-				+1.8
2,407,609	-				-0.4
2,407,612	+				-0.6
2,407,612	+				-0.6
2,407,613	-				+2.0
2,407,617	+				-1.0
2,407,680	+				-0.7
2,407,681	-				-1.8
2,407,681	-				+0.6
2,407,712	+				-0.0
2,407,723	-				-1.4
2,407,736	+				-1.3
2,407,737	-				-1.5
2,407,839	+				-1.6
2,407,840	-				-2.4
2,407,848	+				-0.8
2,407,902	+				-0.6
2,407,902	+				-0.8
2,407,947	+		BT1918	0.13	+0.6
2,407,947	+		BT1918	0.13	-1.0
2,407,977	+		BT1918	0.15	-2.4
2,407,978	-		BT1918	0.15	-2.8
2,408,043	+		BT1918	0.19	-0.0
2,408,098	+		BT1918	0.23	+0.6
2,408,101	+		BT1918	0.23	-0.0
2,408,102	-		BT1918	0.23	-1.8
2,408,104	-		BT1918	0.23	+1.0
2,408,222	+		BT1918	0.31	-0.8
2,408,234	+		BT1918	0.32	+1.6
2,408,295	+		BT1918	0.36	+0.4
2,408,300	-		BT1918	0.36	-0.0
2,408,301	+		BT1918	0.36	-2.3
2,408,326	-		BT1918	0.38	-0.4
2,408,330	-		BT1918	0.38	-1.0
2,408,330	-		BT1918	0.38	-0.8
2,408,330	-		BT1918	0.38	-0.4
2,408,360	+		BT1918	0.40	-1.5
2,408,361	-		BT1918	0.40	+0.2
2,408,368	+		BT1918	0.41	-1.1
2,408,369	-		BT1918	0.41	-0.0
2,408,458	+		BT1918	0.47	-1.0
2,408,458	+		BT1918	0.47	-1.3
2,408,458	+		BT1918	0.47	-1.6
2,408,458	+		BT1918	0.47	-0.9
2,408,458	+		BT1918	0.47	-2.0
2,408,459	-		BT1918	0.47	-1.8
2,408,459	-		BT1918	0.47	-0.4
2,408,460	+		BT1918	0.47	-2.0
2,408,460	+		BT1918	0.47	-0.6
2,408,575	+		BT1918	0.54	-0.8
2,408,576	-		BT1918	0.54	-2.0
2,408,596	+		BT1918	0.56	-1.4
2,408,597	-		BT1918	0.56	+1.0
2,408,597	-		BT1918	0.56	-0.6
2,408,597	-		BT1918	0.56	-2.0
2,408,599	+		BT1918	0.56	-1.0
2,408,603	-		BT1918	0.56	-1.4
2,408,633	+		BT1918	0.58	-2.5
2,408,634	-		BT1918	0.58	-2.0
2,408,634	-		BT1918	0.58	-0.5
2,408,654	+		BT1918	0.60	-0.6
2,408,655	-		BT1918	0.60	-2.1
2,408,712	+		BT1918	0.63	+1.0
2,408,712	+		BT1918	0.63	-0.9
2,408,713	-		BT1918	0.63	-1.6
2,408,764	-		BT1918	0.67	-1.3
2,408,764	-		BT1918	0.67	-0.7
2,408,771	+		BT1918	0.67	-0.0
2,408,776	+		BT1918	0.68	-0.6
2,408,779	-		BT1918	0.68	-0.0
2,408,785	-		BT1918	0.68	-0.0
2,408,835	-		BT1918	0.72	+1.0
2,408,898	-		BT1918	0.76	-0.8
2,408,915	+		BT1918	0.77	-0.8
2,408,915	+		BT1918	0.77	-1.3
2,408,995	+		BT1918	0.82	-0.4
2,409,043	+		BT1918	0.85	-2.4
2,409,120	+				-0.5
2,409,121	-				-1.2
2,409,237	+				-0.0
2,409,237	+				+1.0
2,409,263	+				+1.0
2,409,263	+				-1.0
2,409,310	+				-1.0
2,409,311	-				-1.0
2,409,321	+				-2.0
2,409,396	+				+0.6
2,409,397	-				-0.8
2,409,447	+				-1.0
2,409,463	-				-0.8
2,409,536	-		BT1919	0.11	+1.0
2,409,747	+		BT1919	0.32	+1.0
2,409,747	+		BT1919	0.32	-0.7
2,409,848	+		BT1919	0.42	-0.0
2,409,851	+		BT1919	0.42	-1.4
2,409,851	+		BT1919	0.42	-1.3
2,409,851	+		BT1919	0.42	-1.0
2,409,852	-		BT1919	0.42	-1.0
2,409,874	+		BT1919	0.44	-0.2
2,409,943	-		BT1919	0.51	-1.6
2,409,959	-		BT1919	0.53	-0.0
2,409,979	+		BT1919	0.55	-0.0
2,410,080	-		BT1919	0.65	+0.1
2,410,120	-		BT1919	0.69	-1.0
2,410,120	-		BT1919	0.69	-0.0
2,410,221	-		BT1919	0.79	-2.0