Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1631

Experiment: Chondroitin sulfate A from bovine trachea; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Chondroitin sulfate A from bovine trachea; filtered 2.5 mg/ml (C)
2,013,080	+		BT1630	0.49	-1.0
2,013,112	+		BT1630	0.51	-1.6
2,013,113	-		BT1630	0.51	+1.0
2,013,138	+		BT1630	0.53	-1.0
2,013,191	+		BT1630	0.56	-0.0
2,013,193	+		BT1630	0.56	-0.0
2,013,201	+		BT1630	0.56	-0.0
2,013,351	+		BT1630	0.65	-0.0
2,013,364	+		BT1630	0.65	-0.8
2,013,394	+		BT1630	0.67	-1.2
2,013,397	+		BT1630	0.67	+0.4
2,013,400	+		BT1630	0.67	-0.6
2,013,431	-		BT1630	0.69	+1.0
2,013,484	+		BT1630	0.72	+1.0
2,013,609	+		BT1630	0.79	-0.3
2,013,610	-		BT1630	0.79	-1.6
2,013,681	+		BT1630	0.83	-0.5
2,013,682	-		BT1630	0.83	-0.5
2,013,682	-		BT1630	0.83	-1.8
2,013,685	-		BT1630	0.83	-1.0
2,013,802	+				-0.6
2,013,843	+				-0.0
2,013,867	-				-0.8
2,013,867	-				-1.0
2,013,867	-				-0.6
2,013,883	+				-1.0
2,014,036	+				-1.0
2,014,060	-				-0.6
2,014,083	+				-1.4
2,014,088	+				-0.6
2,014,160	+				-2.9
2,014,161	-				-1.6
2,014,218	+				+1.0
2,014,256	+				-0.6
2,014,262	+				-2.0
2,014,313	+				-1.4
2,014,481	+		BT1631	0.13	-0.0
2,014,481	+		BT1631	0.13	-0.0
2,014,483	+		BT1631	0.13	-0.6
2,014,483	+		BT1631	0.13	-1.6
2,014,488	-		BT1631	0.13	-0.4
2,014,515	-		BT1631	0.14	-0.5
2,014,601	+		BT1631	0.17	-1.9
2,014,679	+		BT1631	0.19	-0.2
2,014,682	-		BT1631	0.19	-1.3
2,014,682	-		BT1631	0.19	-0.9
2,014,825	+		BT1631	0.24	-1.0
2,014,883	+		BT1631	0.25	-1.0
2,014,888	+		BT1631	0.25	-0.0
2,014,889	-		BT1631	0.25	-1.6
2,014,917	+		BT1631	0.26	-1.6
2,015,090	+		BT1631	0.31	-2.1
2,015,090	+		BT1631	0.31	-1.7
2,015,098	+		BT1631	0.32	-1.7
2,015,185	+		BT1631	0.34	-0.6
2,015,302	+		BT1631	0.38	-1.0
2,015,302	+		BT1631	0.38	-1.6
2,015,303	-		BT1631	0.38	-0.0
2,015,395	+		BT1631	0.40	-1.0
2,015,395	+		BT1631	0.40	-0.0
2,015,482	+		BT1631	0.43	-2.7
2,015,518	+		BT1631	0.44	-1.0
2,015,539	+		BT1631	0.45	-2.4
2,015,611	+		BT1631	0.47	-1.0
2,015,639	+		BT1631	0.48	-0.0
2,015,642	-		BT1631	0.48	-1.6
2,015,645	+		BT1631	0.48	+0.5
2,015,791	+		BT1631	0.52	-1.6
2,015,791	+		BT1631	0.52	+1.0
2,015,807	+		BT1631	0.53	-1.6
2,015,840	+		BT1631	0.54	-0.7
2,016,019	+		BT1631	0.59	-2.8
2,016,060	+		BT1631	0.60	+0.2
2,016,060	+		BT1631	0.60	+1.0
2,016,061	-		BT1631	0.60	-0.6
2,016,062	+		BT1631	0.60	-1.8
2,016,065	+		BT1631	0.60	+1.0
2,016,065	+		BT1631	0.60	-1.2
2,016,065	+		BT1631	0.60	-1.2
2,016,127	+		BT1631	0.62	-2.2
2,016,128	-		BT1631	0.62	-2.0
2,016,128	-		BT1631	0.62	-1.0
2,016,222	+		BT1631	0.65	-3.5
2,016,241	+		BT1631	0.66	-1.0
2,016,246	-		BT1631	0.66	-0.5
2,016,287	-		BT1631	0.67	-2.0
2,016,290	+		BT1631	0.67	-2.3
2,016,290	+		BT1631	0.67	-1.0
2,016,292	+		BT1631	0.67	-0.6
2,016,310	+		BT1631	0.68	-0.0
2,016,380	-		BT1631	0.70	-2.0
2,016,401	+		BT1631	0.70	-3.4
2,016,415	+		BT1631	0.71	-2.0
2,016,416	-		BT1631	0.71	-1.2
2,016,418	+		BT1631	0.71	-1.0
2,016,491	+		BT1631	0.73	+0.6
2,016,491	+		BT1631	0.73	-1.2
2,016,575	+		BT1631	0.76	+0.5
2,016,576	-		BT1631	0.76	-0.0
2,016,577	+		BT1631	0.76	-0.0
2,016,578	-		BT1631	0.76	-1.3
2,016,614	+		BT1631	0.77	-0.6
2,016,649	+		BT1631	0.78	-0.0
2,016,694	-		BT1631	0.79	-1.4
2,016,727	-		BT1631	0.80	-0.7
2,016,753	+		BT1631	0.81	-1.8
2,016,753	+		BT1631	0.81	-1.0
2,016,753	+		BT1631	0.81	-1.6
2,016,823	+		BT1631	0.83	-0.0
2,016,824	-		BT1631	0.83	-1.6
2,016,869	+		BT1631	0.84	-2.4
2,016,942	-		BT1631	0.87	-2.0
2,017,046	+		BT1631	0.90	+1.0
2,017,142	-				-1.6
2,017,150	+				-1.0
2,017,150	+				+0.5
2,017,151	-				-1.6
2,017,155	-				-0.0
2,017,173	+				+1.5
2,017,236	+				-1.3
2,017,278	+				-1.0
2,017,398	-				+1.5
2,017,401	-				-0.0
2,017,601	-		BT1632	0.11	-1.6
2,017,673	-		BT1632	0.15	-0.0
2,017,733	+		BT1632	0.18	-0.5
2,017,884	+		BT1632	0.28	-2.1
2,017,933	-		BT1632	0.31	-2.2
2,018,031	+		BT1632	0.36	-0.2
2,018,049	-		BT1632	0.37	-0.0
2,018,109	+		BT1632	0.41	-0.0
2,018,109	+		BT1632	0.41	-1.0
2,018,174	+		BT1632	0.45	-2.6
2,018,322	+		BT1632	0.54	-1.0
2,018,358	-		BT1632	0.56	-1.0
2,018,384	+		BT1632	0.58	+1.0