Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1624

Experiment: Chondroitin sulfate A from bovine trachea; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Chondroitin sulfate A from bovine trachea; filtered 2.5 mg/ml (C)
1,998,573	+		BT1623	0.30	-0.3
1,998,648	+		BT1623	0.36	-0.0
1,998,650	+		BT1623	0.37	-1.0
1,998,774	+		BT1623	0.47	-0.6
1,998,892	+		BT1623	0.57	-0.6
1,999,058	+		BT1623	0.71	-0.8
1,999,223	+		BT1623	0.85	+1.0
1,999,224	-		BT1623	0.85	-1.0
1,999,295	-				-1.9
1,999,391	-				-3.2
1,999,396	-				-0.8
1,999,408	+				+2.3
1,999,408	+				-0.0
1,999,409	-				-0.0
1,999,411	-				-1.0
1,999,412	+				-1.6
1,999,511	+				-1.0
1,999,519	-				-0.7
1,999,685	+		BT1624	0.10	-1.0
1,999,974	-		BT1624	0.29	-2.6
2,000,114	+		BT1624	0.38	-1.2
2,000,114	+		BT1624	0.38	-1.7
2,000,120	+		BT1624	0.38	-1.6
2,000,378	+		BT1624	0.55	-0.0
2,000,380	+		BT1624	0.55	-2.8
2,000,494	+		BT1624	0.62	-1.6
2,000,735	+		BT1624	0.78	-0.0
2,000,780	+		BT1624	0.81	-1.4
2,000,806	+		BT1624	0.82	-0.6
2,000,870	+		BT1624	0.87	-2.8
2,000,877	+		BT1624	0.87	-2.2
2,000,878	-		BT1624	0.87	-2.2
2,000,934	-				-2.0
2,000,968	+				-1.5
2,001,051	+				-0.9
2,001,055	-				-1.0
2,001,056	+				-2.0
2,001,095	-				+1.0
2,001,102	+				-1.7
2,001,111	+				-1.6
2,001,135	+				-0.5
2,001,139	+				-2.6
2,001,142	+				-1.0
2,001,200	+				-1.0
2,001,214	+				-0.0
2,001,304	+				+1.0
2,001,304	+				-1.6
2,001,421	+		BT1625	0.14	-1.3
2,001,421	+		BT1625	0.14	-1.3
2,001,422	-		BT1625	0.14	-0.0
2,001,422	-		BT1625	0.14	-1.0
2,001,643	+		BT1625	0.26	-1.0
2,001,656	+		BT1625	0.27	-2.0
2,001,657	-		BT1625	0.27	-1.0
2,001,792	+		BT1625	0.35	-2.2
2,001,857	-		BT1625	0.38	+1.0
2,001,861	-		BT1625	0.38	-0.8
2,002,035	+		BT1625	0.48	-1.8
2,002,036	-		BT1625	0.48	+1.6
2,002,054	+		BT1625	0.49	-0.0