Experiment: Chondroitin sulfate A from bovine trachea; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0129 and BT0130 are separated by 12 nucleotides BT0130 and BT0131 are separated by 381 nucleotides
BT0129: BT0129 - mannonate dehydratase (NCBI ptt file), at 124,349 to 125,536
BT0129
BT0130: BT0130 - putative oxidoreductase (NCBI ptt file), at 125,549 to 126,364
BT0130
BT0131: BT0131 - putative transposase (NCBI ptt file), at 126,746 to 127,678
BT0131
Position (kb) 125
126
127 Strain fitness (log2 ratio) -2
-1
0
1
2 at 124.549 kb on + strand, within BT0129 at 124.549 kb on + strand, within BT0129 at 124.549 kb on + strand, within BT0129 at 124.549 kb on + strand, within BT0129 at 124.616 kb on + strand, within BT0129 at 124.623 kb on - strand, within BT0129 at 124.640 kb on - strand, within BT0129 at 124.774 kb on + strand, within BT0129 at 124.825 kb on + strand, within BT0129 at 124.825 kb on + strand, within BT0129 at 124.836 kb on + strand, within BT0129 at 124.907 kb on - strand, within BT0129 at 125.151 kb on + strand, within BT0129 at 125.151 kb on + strand, within BT0129 at 125.154 kb on + strand, within BT0129 at 125.164 kb on + strand, within BT0129 at 125.184 kb on + strand, within BT0129 at 125.184 kb on + strand, within BT0129 at 125.184 kb on + strand, within BT0129 at 125.197 kb on + strand, within BT0129 at 125.197 kb on + strand, within BT0129 at 125.198 kb on - strand, within BT0129 at 125.255 kb on - strand, within BT0129 at 125.273 kb on + strand, within BT0129 at 125.316 kb on + strand, within BT0129 at 125.378 kb on + strand, within BT0129 at 125.382 kb on + strand, within BT0129 at 125.551 kb on - strand at 125.660 kb on - strand, within BT0130 at 125.850 kb on - strand, within BT0130 at 125.871 kb on + strand, within BT0130 at 125.969 kb on - strand, within BT0130 at 126.037 kb on - strand, within BT0130 at 126.198 kb on + strand, within BT0130 at 126.327 kb on - strand at 126.333 kb on - strand at 126.346 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chondroitin sulfate A from bovine trachea; filtered 2.5 mg/ml (C) remove 124,549 + BT0129 0.17 -1.1 124,549 + BT0129 0.17 -1.4 124,549 + BT0129 0.17 -2.1 124,549 + BT0129 0.17 +2.2 124,616 + BT0129 0.22 -1.1 124,623 - BT0129 0.23 -1.2 124,640 - BT0129 0.24 -1.4 124,774 + BT0129 0.36 -0.1 124,825 + BT0129 0.40 -0.1 124,825 + BT0129 0.40 -2.4 124,836 + BT0129 0.41 -0.1 124,907 - BT0129 0.47 +0.3 125,151 + BT0129 0.68 +1.5 125,151 + BT0129 0.68 -1.9 125,154 + BT0129 0.68 -1.1 125,164 + BT0129 0.69 -0.1 125,184 + BT0129 0.70 -1.5 125,184 + BT0129 0.70 +1.2 125,184 + BT0129 0.70 -0.6 125,197 + BT0129 0.71 -0.8 125,197 + BT0129 0.71 -0.4 125,198 - BT0129 0.71 -0.7 125,255 - BT0129 0.76 -0.5 125,273 + BT0129 0.78 -2.0 125,316 + BT0129 0.81 -1.1 125,378 + BT0129 0.87 -0.7 125,382 + BT0129 0.87 -1.3 125,551 - -1.7 125,660 - BT0130 0.14 -1.1 125,850 - BT0130 0.37 -1.8 125,871 + BT0130 0.39 -1.1 125,969 - BT0130 0.51 +1.1 126,037 - BT0130 0.60 -1.7 126,198 + BT0130 0.80 -1.1 126,327 - -0.1 126,333 - -1.1 126,346 + -1.1
Or see this region's nucleotide sequence