Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4421
Experiment: Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Amylopectin from Potato; autoclaved 2.5 mg/ml (C) |
---|---|---|---|---|---|
remove | |||||
5,823,789 | - | BT4420 | 0.22 | -2.1 | |
5,823,789 | - | BT4420 | 0.22 | -1.7 | |
5,823,992 | + | BT4420 | 0.41 | -0.4 | |
5,823,993 | - | BT4420 | 0.41 | -0.6 | |
5,824,052 | - | BT4420 | 0.46 | +0.7 | |
5,824,054 | - | BT4420 | 0.46 | +0.4 | |
5,824,116 | + | BT4420 | 0.52 | -1.6 | |
5,824,158 | - | BT4420 | 0.56 | -0.1 | |
5,824,389 | - | BT4420 | 0.77 | +1.4 | |
5,824,586 | - | -2.9 | |||
5,824,636 | - | -0.8 | |||
5,824,666 | - | -0.6 | |||
5,824,688 | + | +0.9 | |||
5,824,689 | - | -2.4 | |||
5,824,700 | + | -1.1 | |||
5,824,701 | - | -1.1 | |||
5,824,701 | - | -1.6 | |||
5,824,778 | + | BT4421 | 0.23 | -1.9 | |
5,824,834 | + | BT4421 | 0.38 | -1.9 | |
5,824,976 | - | BT4421 | 0.76 | +0.4 | |
5,825,020 | - | BT4421 | 0.88 | -1.1 | |
5,825,172 | - | BT4422 | 0.19 | -0.6 | |
5,825,172 | - | BT4422 | 0.19 | +0.4 | |
5,825,490 | - | BT4422 | 0.86 | -3.4 | |
5,825,566 | - | -1.1 | |||
5,825,584 | - | +0.4 | |||
5,825,592 | + | -0.1 | |||
5,825,592 | + | -0.0 | |||
5,825,692 | + | -1.1 | |||
5,825,693 | - | -0.6 | |||
5,825,801 | + | BT4423 | 0.14 | -1.6 | |
5,825,842 | - | BT4423 | 0.17 | -0.6 | |
5,825,876 | - | BT4423 | 0.19 | -0.6 | |
5,825,876 | - | BT4423 | 0.19 | -0.6 | |
5,826,059 | - | BT4423 | 0.31 | +1.4 |
Or see this region's nucleotide sequence