Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3903

Experiment: Amylopectin from Potato; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
5,073,338	+		BT3902	0.26	+0.4
5,073,418	-				-0.6
5,073,418	-		BT3902	0.32	-3.8
5,073,460	-		BT3902	0.36	-1.7
5,073,484	+		BT3902	0.38	-1.0
5,073,492	+		BT3902	0.38	-1.6
5,073,498	+		BT3902	0.39	-1.0
5,073,514	+		BT3902	0.40	-1.7
5,073,515	-		BT3902	0.40	-1.7
5,073,520	-		BT3902	0.41	+0.4
5,073,557	-		BT3902	0.43	-1.4
5,073,637	-		BT3902	0.50	-0.8
5,073,648	+		BT3902	0.51	-0.6
5,073,649	-		BT3902	0.51	-0.6
5,073,664	-		BT3902	0.52	-1.7
5,073,724	+		BT3902	0.57	+1.4
5,073,730	-		BT3902	0.57	-1.9
5,073,789	+		BT3902	0.62	-1.1
5,073,792	-		BT3902	0.62	-1.2
5,073,842	+		BT3902	0.66	+0.4
5,073,842	+		BT3902	0.66	-1.2
5,073,842	+		BT3902	0.66	+0.4
5,073,843	-		BT3902	0.66	-1.0
5,073,931	+		BT3902	0.73	+0.8
5,073,931	+		BT3902	0.73	-1.2
5,073,932	-		BT3902	0.73	-1.4
5,074,039	+		BT3902	0.82	-1.2
5,074,096	-		BT3902	0.86	+0.4
5,074,111	+		BT3902	0.87	+3.0
5,074,257	+				+1.4
5,074,274	+				-1.2
5,074,274	+				-1.4
5,074,279	-				-1.5
5,074,285	-				-1.3
5,074,287	+				-3.2
5,074,343	+				-0.6
5,074,355	-				+0.4
5,074,356	+				-1.8
5,074,371	+				-1.9
5,074,403	+		BT3903	0.11	-0.6
5,074,598	+		BT3903	0.28	+0.4
5,074,598	+		BT3903	0.28	-2.2
5,074,599	-		BT3903	0.28	-1.9
5,074,599	-		BT3903	0.28	-2.6
5,074,673	+		BT3903	0.34	+0.8
5,074,673	+		BT3903	0.34	-1.9
5,074,674	-		BT3903	0.34	-0.8
5,074,681	-		BT3903	0.35	-0.9
5,074,694	+		BT3903	0.36	-1.6
5,074,845	-		BT3903	0.49	-1.9
5,074,872	+		BT3903	0.51	+0.4
5,074,872	+		BT3903	0.51	-1.2
5,074,875	-		BT3903	0.51	-1.4
5,074,976	+		BT3903	0.60	-1.2
5,074,977	-		BT3903	0.60	+0.4
5,075,061	+		BT3903	0.67	-1.8
5,075,190	+		BT3903	0.78	-0.3
5,075,190	+		BT3903	0.78	-1.2
5,075,198	+		BT3903	0.79	-0.4
5,075,339	+				-1.8
5,075,340	-				-1.8
5,075,381	+				-1.2
5,075,385	-				-1.1
5,075,423	+				-1.3
5,075,423	+				-1.2
5,075,428	-				-0.6
5,075,428	-				-1.6
5,075,453	+				-1.2
5,075,461	-				-2.1
5,075,551	-				+1.4
5,075,576	+				+0.8
5,075,576	+		BT3904	0.12	-0.7
5,075,577	-		BT3904	0.13	-2.2
5,075,584	+		BT3904	0.13	+1.4
5,075,622	+		BT3904	0.17	-2.4
5,075,832	-		BT3904	0.38	-0.6
5,075,925	+		BT3904	0.48	-0.2
5,075,925	+		BT3904	0.48	-2.2
5,075,925	+		BT3904	0.48	+2.0
5,075,926	-		BT3904	0.48	+0.4
5,075,926	-		BT3904	0.48	-1.1
5,075,926	-		BT3904	0.48	-1.6
5,075,927	+		BT3904	0.48	-0.1
5,076,041	+		BT3904	0.59	-1.3
5,076,270	+		BT3904	0.82	+0.4
5,076,382	-				-1.8
5,076,444	+				-0.6
5,076,447	+				-0.2