Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3705

Experiment: Amylopectin from Potato; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
4,814,056	-	SusA	BT3704	0.57	-1.0
4,814,107	-	SusA	BT3704	0.60	-0.4
4,814,107	-	SusA	BT3704	0.60	+0.4
4,814,179	+	SusA	BT3704	0.64	-0.2
4,814,250	-	SusA	BT3704	0.68	+0.4
4,814,297	+	SusA	BT3704	0.70	+2.6
4,814,298	-	SusA	BT3704	0.70	-0.9
4,814,298	-	SusA	BT3704	0.70	-0.4
4,814,299	+	SusA	BT3704	0.70	+1.4
4,814,321	+	SusA	BT3704	0.71	+0.4
4,814,321	+	SusA	BT3704	0.71	-0.0
4,814,322	-	SusA	BT3704	0.71	-0.6
4,814,322	-	SusA	BT3704	0.71	-0.6
4,814,326	-	SusA	BT3704	0.72	-0.1
4,814,461	+	SusA	BT3704	0.79	-1.2
4,814,611	-	SusA	BT3704	0.87	-0.6
4,814,697	-				-1.5
4,814,712	-				+1.4
4,814,714	+				-0.8
4,814,718	-				-0.8
4,814,771	-				-0.6
4,814,793	-				-1.4
4,815,054	-				-3.9
4,815,054	-				-1.2
4,815,066	-				+0.4
4,815,106	-				-2.8
4,815,110	+				-1.2
4,815,111	-				-1.9
4,815,164	-	SusR	BT3705	0.13	+0.4
4,815,205	+	SusR	BT3705	0.15	-2.6
4,815,205	+	SusR	BT3705	0.15	-1.2
4,815,207	+	SusR	BT3705	0.15	+0.4
4,815,207	+	SusR	BT3705	0.15	-2.8
4,815,208	-	SusR	BT3705	0.15	+0.4
4,815,208	-	SusR	BT3705	0.15	-1.2
4,815,208	-	SusR	BT3705	0.15	-1.2
4,815,208	-	SusR	BT3705	0.15	+0.4
4,815,231	+	SusR	BT3705	0.16	-5.1
4,815,250	+	SusR	BT3705	0.17	-3.5
4,815,308	+	SusR	BT3705	0.21	+0.4
4,815,308	+	SusR	BT3705	0.21	-3.0
4,815,308	+	SusR	BT3705	0.21	+0.4
4,815,309	-	SusR	BT3705	0.21	-0.6
4,815,362	+	SusR	BT3705	0.24	-1.9
4,815,365	-	SusR	BT3705	0.24	-2.8
4,815,384	+	SusR	BT3705	0.25	-2.9
4,815,397	-	SusR	BT3705	0.26	-3.1
4,815,417	-	SusR	BT3705	0.27	+0.4
4,815,417	-	SusR	BT3705	0.27	+0.4
4,815,454	-	SusR	BT3705	0.29	-4.1
4,815,465	-	SusR	BT3705	0.30	-3.2
4,815,465	-	SusR	BT3705	0.30	-2.6
4,815,476	-	SusR	BT3705	0.30	-3.2
4,815,534	-	SusR	BT3705	0.34	-4.2
4,815,679	+	SusR	BT3705	0.42	-3.2
4,815,695	-	SusR	BT3705	0.43	-0.6
4,815,695	-	SusR	BT3705	0.43	-3.3
4,815,775	-	SusR	BT3705	0.47	-2.5
4,815,775	-	SusR	BT3705	0.47	+0.4
4,815,779	-	SusR	BT3705	0.48	-1.9
4,815,782	+	SusR	BT3705	0.48	-2.5
4,815,783	-	SusR	BT3705	0.48	-1.6
4,815,783	-	SusR	BT3705	0.48	-1.9
4,815,783	-	SusR	BT3705	0.48	-1.2
4,815,804	-	SusR	BT3705	0.49	-3.1
4,815,805	+	SusR	BT3705	0.49	-2.1
4,815,888	-	SusR	BT3705	0.54	-3.4
4,815,982	-	SusR	BT3705	0.59	-1.2
4,815,988	+	SusR	BT3705	0.60	-1.9
4,815,989	-	SusR	BT3705	0.60	-0.2
4,816,040	-	SusR	BT3705	0.63	-3.9
4,816,046	+	SusR	BT3705	0.63	-3.5
4,816,047	-	SusR	BT3705	0.63	-3.1
4,816,049	-	SusR	BT3705	0.63	-1.6
4,816,096	+	SusR	BT3705	0.66	-3.7
4,816,139	+	SusR	BT3705	0.68	-3.7
4,816,254	+	SusR	BT3705	0.75	-2.4
4,816,255	-	SusR	BT3705	0.75	-3.9
4,816,256	+	SusR	BT3705	0.75	-2.9
4,816,257	-	SusR	BT3705	0.75	+0.4
4,816,257	-	SusR	BT3705	0.75	-4.7
4,816,258	+	SusR	BT3705	0.75	-1.6
4,816,259	-	SusR	BT3705	0.75	-1.2
4,816,259	-	SusR	BT3705	0.75	+0.4
4,816,274	+	SusR	BT3705	0.76	-0.6
4,816,294	-	SusR	BT3705	0.77	+0.4
4,816,297	+	SusR	BT3705	0.77	-1.2
4,816,336	+	SusR	BT3705	0.80	-2.3
4,816,348	+	SusR	BT3705	0.80	-0.6
4,816,426	+	SusR	BT3705	0.85	-2.2
4,816,456	+	SusR	BT3705	0.86	-3.0
4,816,612	+				-3.9
4,816,613	-				-1.2
4,816,613	-				-3.7
4,816,618	+				-0.6
4,816,623	-				-2.2
4,816,644	-				-3.5
4,816,702	+				-2.8
4,816,702	+				-1.6
4,816,702	+				-0.6
4,816,735	-				-2.8
4,816,746	-				-0.6
4,816,892	-				+0.4