Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3702

Experiment: Amylopectin from Potato; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
4,806,483	-	SusD	BT3701	0.45	-2.4
4,806,496	+	SusD	BT3701	0.46	-3.3
4,806,511	+	SusD	BT3701	0.46	-6.0
4,806,512	-	SusD	BT3701	0.46	-2.4
4,806,515	+	SusD	BT3701	0.47	-4.8
4,806,515	+	SusD	BT3701	0.47	-2.4
4,806,516	-	SusD	BT3701	0.47	-0.6
4,806,619	-	SusD	BT3701	0.53	-2.6
4,806,619	-	SusD	BT3701	0.53	-1.2
4,806,623	+	SusD	BT3701	0.53	-1.9
4,806,623	+	SusD	BT3701	0.53	-3.3
4,806,652	+	SusD	BT3701	0.55	-4.5
4,806,688	+	SusD	BT3701	0.57	-4.4
4,806,688	+	SusD	BT3701	0.57	-3.5
4,806,775	+	SusD	BT3701	0.62	-4.4
4,806,775	+	SusD	BT3701	0.62	-0.6
4,806,775	+	SusD	BT3701	0.62	-2.3
4,806,776	-	SusD	BT3701	0.62	-0.9
4,806,776	-	SusD	BT3701	0.62	-3.3
4,806,776	-	SusD	BT3701	0.62	+0.4
4,806,776	-	SusD	BT3701	0.62	-3.3
4,806,779	+	SusD	BT3701	0.63	+0.4
4,806,780	-	SusD	BT3701	0.63	-2.4
4,806,814	+	SusD	BT3701	0.65	+0.4
4,806,815	-	SusD	BT3701	0.65	-1.2
4,806,815	-	SusD	BT3701	0.65	-0.6
4,806,819	-	SusD	BT3701	0.65	-1.6
4,806,821	-	SusD	BT3701	0.65	-2.6
4,806,910	+	SusD	BT3701	0.71	-3.4
4,806,998	+	SusD	BT3701	0.76	-1.6
4,806,999	-	SusD	BT3701	0.76	+0.4
4,807,001	-	SusD	BT3701	0.76	+0.4
4,807,077	-	SusD	BT3701	0.81	-3.9
4,807,077	-	SusD	BT3701	0.81	-2.8
4,807,322	+				-1.6
4,807,383	-				-3.1
4,807,411	-				-3.3
4,807,435	-				-2.2
4,807,441	-				+1.4
4,807,465	+				-1.6
4,807,492	-				-1.2
4,807,544	+				-2.4
4,807,545	-				-3.5
4,807,551	+				-3.6
4,807,633	-				-2.9
4,807,633	-				-1.5
4,807,651	-				-3.5
4,807,721	+	SusC	BT3702	0.10	-3.1
4,807,721	+	SusC	BT3702	0.10	-0.6
4,807,722	-	SusC	BT3702	0.10	-1.2
4,807,724	-	SusC	BT3702	0.10	-3.4
4,807,793	-	SusC	BT3702	0.12	-0.6
4,807,838	+	SusC	BT3702	0.14	-0.6
4,807,840	+	SusC	BT3702	0.14	-0.6
4,807,840	+	SusC	BT3702	0.14	+0.4
4,807,891	+	SusC	BT3702	0.16	+0.4
4,807,895	+	SusC	BT3702	0.16	+1.4
4,807,898	-	SusC	BT3702	0.16	-1.2
4,807,898	-	SusC	BT3702	0.16	-2.6
4,808,031	+	SusC	BT3702	0.20	-0.6
4,808,031	+	SusC	BT3702	0.20	-4.0
4,808,074	-	SusC	BT3702	0.22	-1.2
4,808,074	-	SusC	BT3702	0.22	+0.4
4,808,132	+	SusC	BT3702	0.24	-2.8
4,808,133	-	SusC	BT3702	0.24	+0.4
4,808,138	+	SusC	BT3702	0.24	-0.6
4,808,206	+	SusC	BT3702	0.26	-3.3
4,808,270	+	SusC	BT3702	0.28	-1.2
4,808,420	+	SusC	BT3702	0.33	-0.0
4,808,426	-	SusC	BT3702	0.33	-0.6
4,808,428	+	SusC	BT3702	0.33	-0.6
4,808,428	+	SusC	BT3702	0.33	-1.2
4,808,429	-	SusC	BT3702	0.34	-1.6
4,808,429	-	SusC	BT3702	0.34	-3.1
4,808,429	-	SusC	BT3702	0.34	-4.1
4,808,456	-	SusC	BT3702	0.34	-2.2
4,808,463	-	SusC	BT3702	0.35	-0.6
4,808,470	-	SusC	BT3702	0.35	-1.4
4,808,470	-	SusC	BT3702	0.35	-2.8
4,808,473	+	SusC	BT3702	0.35	-5.5
4,808,474	-	SusC	BT3702	0.35	-1.6
4,808,474	-	SusC	BT3702	0.35	-1.6
4,808,486	-	SusC	BT3702	0.35	-1.6
4,808,621	+	SusC	BT3702	0.40	+1.4
4,808,750	-	SusC	BT3702	0.44	-4.6
4,808,750	-	SusC	BT3702	0.44	+0.4
4,808,792	+	SusC	BT3702	0.46	-3.3
4,808,896	+	SusC	BT3702	0.49	-4.7
4,808,897	-	SusC	BT3702	0.49	-0.6
4,808,901	+	SusC	BT3702	0.49	-1.6
4,808,902	-	SusC	BT3702	0.49	-4.9
4,808,902	-	SusC	BT3702	0.49	-1.2
4,808,902	-	SusC	BT3702	0.49	-2.6
4,808,906	-	SusC	BT3702	0.49	-1.6
4,808,908	-	SusC	BT3702	0.49	-1.2
4,808,915	-	SusC	BT3702	0.50	-5.0
4,808,926	+	SusC	BT3702	0.50	+0.4
4,808,963	-	SusC	BT3702	0.51	-2.4
4,808,996	+	SusC	BT3702	0.52	-0.6
4,808,996	+	SusC	BT3702	0.52	-2.8
4,808,996	+	SusC	BT3702	0.52	-3.9
4,809,005	+	SusC	BT3702	0.53	+0.4
4,809,005	+	SusC	BT3702	0.53	-2.2
4,809,027	+	SusC	BT3702	0.53	-1.2
4,809,027	+	SusC	BT3702	0.53	-1.2
4,809,027	+	SusC	BT3702	0.53	-0.2
4,809,028	-	SusC	BT3702	0.53	-0.6
4,809,241	+	SusC	BT3702	0.60	-4.5
4,809,320	-	SusC	BT3702	0.63	-1.8
4,809,350	+	SusC	BT3702	0.64	-2.9
4,809,351	-	SusC	BT3702	0.64	-0.6
4,809,364	-	SusC	BT3702	0.65	-2.4
4,809,466	-	SusC	BT3702	0.68	-3.1
4,809,473	-	SusC	BT3702	0.68	-2.9
4,809,530	+	SusC	BT3702	0.70	-0.6
4,809,597	+	SusC	BT3702	0.72	-1.2
4,809,637	-	SusC	BT3702	0.74	-3.6
4,809,795	-	SusC	BT3702	0.79	-3.5
4,809,992	+	SusC	BT3702	0.85	-0.6
4,810,031	+	SusC	BT3702	0.87	-4.1
4,810,031	+	SusC	BT3702	0.87	-2.6
4,810,035	+	SusC	BT3702	0.87	-0.6
4,810,107	+	SusC	BT3702	0.89	-2.6
4,810,110	+	SusC	BT3702	0.89	-3.6
4,810,111	-	SusC	BT3702	0.89	-5.1
4,810,111	-	SusC	BT3702	0.89	-1.9
4,810,147	-				-2.2
4,810,209	+				+0.4
4,810,210	-				-1.2
4,810,210	-				-2.6
4,810,210	-				-6.1
4,810,387	-				-0.6
4,810,388	+				-2.2
4,810,389	-				-3.3
4,810,465	-				-0.8
4,810,484	-				+0.2
4,810,484	-				-0.6
4,810,487	+				-3.2
4,810,561	+				-1.4
4,810,571	-				+0.4
4,810,584	-				-0.4
4,810,641	+				+0.4
4,810,642	-				-1.9
4,810,646	+				-3.8
4,810,713	+				-2.2
4,810,715	+				+0.4
4,810,716	-				+0.4
4,810,775	+				-3.4
4,810,776	-				-1.2
4,810,818	+	SusB	BT3703	0.11	-3.4
4,810,818	+	SusB	BT3703	0.11	-0.6
4,810,819	-	SusB	BT3703	0.11	-0.6
4,810,846	+	SusB	BT3703	0.12	-3.9
4,810,851	-	SusB	BT3703	0.12	-1.6
4,810,893	-	SusB	BT3703	0.14	-1.9
4,810,893	-	SusB	BT3703	0.14	-2.5
4,810,894	-	SusB	BT3703	0.14	-1.2
4,810,916	+	SusB	BT3703	0.15	-1.6
4,810,942	+	SusB	BT3703	0.16	-1.9
4,811,021	+	SusB	BT3703	0.20	-1.9
4,811,022	-	SusB	BT3703	0.20	+0.4
4,811,033	+	SusB	BT3703	0.20	-1.2
4,811,034	-	SusB	BT3703	0.20	-1.4
4,811,065	+	SusB	BT3703	0.22	-0.6
4,811,066	-	SusB	BT3703	0.22	-0.9
4,811,172	+	SusB	BT3703	0.26	-3.2
4,811,172	+	SusB	BT3703	0.26	-3.4
4,811,173	-	SusB	BT3703	0.27	-1.6
4,811,177	+	SusB	BT3703	0.27	+0.4
4,811,177	+	SusB	BT3703	0.27	-2.5
4,811,178	-	SusB	BT3703	0.27	-3.4
4,811,180	-	SusB	BT3703	0.27	-1.4
4,811,180	-	SusB	BT3703	0.27	-3.1
4,811,180	-	SusB	BT3703	0.27	-0.2
4,811,180	-	SusB	BT3703	0.27	-0.6
4,811,246	+	SusB	BT3703	0.30	-1.9
4,811,251	-	SusB	BT3703	0.30	-0.2
4,811,327	+	SusB	BT3703	0.33	-1.4
4,811,328	-	SusB	BT3703	0.34	-1.2
4,811,328	-	SusB	BT3703	0.34	+0.4
4,811,389	+	SusB	BT3703	0.36	-3.2
4,811,390	-	SusB	BT3703	0.36	-1.0
4,811,415	-	SusB	BT3703	0.37	-1.2