Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3699

Experiment: Amylopectin from Potato; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
4,802,072	+	SusG	BT3698	0.58	-0.2
4,802,170	+	SusG	BT3698	0.62	-0.6
4,802,174	-				-3.1
4,802,180	-	SusG	BT3698	0.63	-3.5
4,802,279	+	SusG	BT3698	0.68	-1.4
4,802,422	+	SusG	BT3698	0.75	-2.4
4,802,426	-	SusG	BT3698	0.75	-1.9
4,802,457	-	SusG	BT3698	0.76	+1.4
4,802,499	+	SusG	BT3698	0.78	+0.4
4,802,499	+	SusG	BT3698	0.78	-4.4
4,802,512	+	SusG	BT3698	0.79	-1.2
4,802,543	+	SusG	BT3698	0.80	+0.4
4,802,597	-	SusG	BT3698	0.83	-3.0
4,802,627	+	SusG	BT3698	0.84	-2.4
4,802,746	+				-2.4
4,802,754	+				-2.9
4,802,811	-				-4.4
4,802,962	+				-4.4
4,802,963	-				+0.4
4,802,974	+				-2.4
4,803,019	-				-1.2
4,803,057	-				-0.6
4,803,057	-				-0.7
4,803,059	+				+0.4
4,803,059	+				-0.6
4,803,160	+				-2.6
4,803,161	-				+0.4
4,803,238	+	SusF	BT3699	0.12	+0.4
4,803,238	+				-0.6
4,803,301	-	SusF	BT3699	0.16	-0.6
4,803,301	-	SusF	BT3699	0.16	+0.4
4,803,316	+	SusF	BT3699	0.17	-2.2
4,803,317	-	SusF	BT3699	0.18	-1.9
4,803,341	+	SusF	BT3699	0.19	-1.9
4,803,341	+	SusF	BT3699	0.19	+0.4
4,803,341	+	SusF	BT3699	0.19	-4.4
4,803,364	+	SusF	BT3699	0.21	-2.6
4,803,365	-	SusF	BT3699	0.21	-0.6
4,803,416	+	SusF	BT3699	0.24	+0.4
4,803,421	+	SusF	BT3699	0.25	-3.4
4,803,422	-	SusF	BT3699	0.25	-1.2
4,803,438	+	SusF	BT3699	0.26	-0.6
4,803,501	+	SusF	BT3699	0.30	-5.0
4,803,501	+	SusF	BT3699	0.30	-1.2
4,803,771	+	SusF	BT3699	0.49	+0.4
4,803,829	+	SusF	BT3699	0.53	-2.3
4,803,834	+	SusF	BT3699	0.53	+0.4
4,803,835	-	SusF	BT3699	0.53	-0.2
4,803,860	-	SusF	BT3699	0.55	-1.8
4,803,876	+	SusF	BT3699	0.56	-2.9
4,803,935	+	SusF	BT3699	0.60	-5.1
4,803,936	-	SusF	BT3699	0.60	-1.6
4,804,010	-	SusF	BT3699	0.65	+0.4
4,804,011	+	SusF	BT3699	0.65	-2.1
4,804,011	+	SusF	BT3699	0.65	-1.9
4,804,011	+	SusF	BT3699	0.65	-1.2
4,804,012	-	SusF	BT3699	0.65	-1.2
4,804,012	-	SusF	BT3699	0.65	-1.5
4,804,014	-	SusF	BT3699	0.65	-1.6
4,804,066	+	SusF	BT3699	0.69	-4.6
4,804,067	-	SusF	BT3699	0.69	-1.2
4,804,108	+	SusF	BT3699	0.72	-1.6
4,804,145	-	SusF	BT3699	0.74	-1.9
4,804,166	+	SusF	BT3699	0.76	-1.2
4,804,167	-	SusF	BT3699	0.76	-1.6
4,804,284	+	SusF	BT3699	0.84	-3.9
4,804,542	-				+0.4
4,804,545	+				-2.2
4,804,729	+	SusE	BT3700	0.16	-1.5
4,804,729	+	SusE	BT3700	0.16	-1.2
4,804,729	+	SusE	BT3700	0.16	-1.1
4,804,867	-	SusE	BT3700	0.28	-2.2
4,804,926	+	SusE	BT3700	0.33	+0.4
4,805,021	-	SusE	BT3700	0.41	-0.6
4,805,023	-	SusE	BT3700	0.41	-1.9
4,805,082	+	SusE	BT3700	0.46	+0.1
4,805,127	-	SusE	BT3700	0.50	-1.9
4,805,127	-	SusE	BT3700	0.50	-0.6
4,805,150	-	SusE	BT3700	0.52	-1.9
4,805,150	-	SusE	BT3700	0.52	+1.4
4,805,150	-	SusE	BT3700	0.52	-2.4
4,805,156	+	SusE	BT3700	0.53	-2.1
4,805,287	-	SusE	BT3700	0.64	-0.6
4,805,287	-	SusE	BT3700	0.64	-1.5
4,805,288	+	SusE	BT3700	0.64	-1.2
4,805,288	+	SusE	BT3700	0.64	-1.6
4,805,289	-	SusE	BT3700	0.64	-0.2
4,805,419	+	SusE	BT3700	0.75	+0.4
4,805,420	-	SusE	BT3700	0.75	-1.1
4,805,421	+	SusE	BT3700	0.75	-0.9
4,805,422	-	SusE	BT3700	0.75	+0.4
4,805,422	-	SusE	BT3700	0.75	-1.2
4,805,491	+	SusE	BT3700	0.81	+0.4
4,805,492	-	SusE	BT3700	0.81	-0.6
4,805,492	-	SusE	BT3700	0.81	+0.4