Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3549

Experiment: Amylopectin from Potato; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
4,587,626	-		BT3548	0.21	-1.2
4,587,653	-		BT3548	0.23	+0.4
4,587,735	+		BT3548	0.30	-1.2
4,587,770	+		BT3548	0.33	-2.2
4,587,788	-		BT3548	0.35	+0.4
4,587,808	-		BT3548	0.36	-2.1
4,587,809	+		BT3548	0.36	-1.0
4,587,810	-		BT3548	0.36	-1.2
4,587,856	+		BT3548	0.40	-0.4
4,587,923	+		BT3548	0.46	-1.2
4,587,924	-		BT3548	0.46	-0.2
4,587,926	-		BT3548	0.46	+0.4
4,587,926	-		BT3548	0.46	-0.6
4,587,931	+		BT3548	0.46	-0.3
4,587,931	+		BT3548	0.46	-2.1
4,587,942	+		BT3548	0.47	-2.4
4,587,943	-		BT3548	0.47	-2.2
4,587,947	+		BT3548	0.48	+0.4
4,587,948	-		BT3548	0.48	+1.4
4,587,948	-		BT3548	0.48	-0.8
4,587,952	+		BT3548	0.48	-1.7
4,587,957	-		BT3548	0.48	-1.9
4,587,957	-		BT3548	0.48	-0.8
4,587,995	-		BT3548	0.52	-1.6
4,588,045	+		BT3548	0.56	-3.4
4,588,062	+		BT3548	0.57	-2.1
4,588,085	+		BT3548	0.59	-1.9
4,588,110	+		BT3548	0.61	-1.2
4,588,114	+		BT3548	0.61	-0.9
4,588,115	-		BT3548	0.61	+0.4
4,588,115	-		BT3548	0.61	-0.6
4,588,128	-		BT3548	0.63	-0.6
4,588,129	+		BT3548	0.63	-0.4
4,588,133	+		BT3548	0.63	-1.2
4,588,171	+		BT3548	0.66	-1.3
4,588,172	-		BT3548	0.66	+0.4
4,588,230	+		BT3548	0.71	-0.6
4,588,246	-		BT3548	0.72	+1.0
4,588,338	+		BT3548	0.80	-2.1
4,588,340	+		BT3548	0.80	-0.2
4,588,340	+		BT3548	0.80	-0.9
4,588,341	-		BT3548	0.80	+1.0
4,588,344	+		BT3548	0.80	-0.6
4,588,345	-		BT3548	0.80	+0.4
4,588,401	+		BT3548	0.85	-0.6
4,588,403	+		BT3548	0.85	-1.6
4,588,415	-		BT3548	0.86	+0.4
4,588,418	+		BT3548	0.86	-1.9
4,588,464	+				-0.6
4,588,489	+				-0.6
4,588,489	+				-0.0
4,588,493	+				-1.2
4,588,504	+				-1.2
4,588,515	+				-1.5
4,588,516	-				-0.9
4,588,622	-				-3.1
4,588,642	-				-1.6
4,588,656	-				-1.2
4,588,656	-				-2.4
4,588,656	-				+0.4
4,588,659	-				-0.6
4,588,659	-				-1.9
4,588,660	+				-1.6
4,588,661	-				-4.0
4,588,761	+		BT3549	0.16	-2.2
4,588,761	+		BT3549	0.16	-0.6
4,588,857	+		BT3549	0.25	-1.2
4,588,860	-		BT3549	0.25	-5.6
4,588,947	+		BT3549	0.33	-3.6
4,588,947	+		BT3549	0.33	-1.2
4,589,058	+		BT3549	0.44	-0.6
4,589,058	+		BT3549	0.44	-0.6
4,589,066	-		BT3549	0.45	-0.6
4,589,075	+		BT3549	0.45	+0.4
4,589,171	+		BT3549	0.54	-3.5
4,589,171	+		BT3549	0.54	-0.6
4,589,218	-		BT3549	0.59	-1.9
4,589,319	+		BT3549	0.68	-6.6
4,589,320	-		BT3549	0.68	-2.4
4,589,373	-		BT3549	0.73	-3.8
4,589,481	-		BT3549	0.83	-2.9
4,589,620	-				-1.6
4,589,646	-				-0.6
4,589,675	+				-2.8
4,589,747	+				-1.2
4,589,757	+				-1.6
4,589,783	+				+0.4
4,589,914	-				-0.6
4,590,067	+		BT3550	0.17	+0.4
4,590,264	+		BT3550	0.28	-2.4
4,590,302	-		BT3550	0.30	-0.6
4,590,501	+		BT3550	0.41	-3.4
4,590,609	-		BT3550	0.47	+0.4