Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3529

Experiment: Amylopectin from Potato; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
4,562,468	-		BT3528	0.40	-0.5
4,562,468	-		BT3528	0.40	-0.6
4,562,620	-		BT3528	0.51	-0.6
4,562,775	+		BT3528	0.61	-1.9
4,562,781	-		BT3528	0.62	-1.4
4,562,851	+		BT3528	0.66	-0.7
4,562,860	+		BT3528	0.67	-0.6
4,562,860	+		BT3528	0.67	-0.9
4,562,860	+		BT3528	0.67	+0.4
4,562,860	+		BT3528	0.67	-2.1
4,562,861	-		BT3528	0.67	-0.2
4,562,861	-		BT3528	0.67	+2.4
4,562,861	-		BT3528	0.67	-0.6
4,562,880	+		BT3528	0.68	-0.6
4,562,880	+		BT3528	0.68	-1.2
4,562,881	-		BT3528	0.68	-1.2
4,562,887	+		BT3528	0.69	+0.4
4,562,979	-		BT3528	0.75	-2.0
4,562,984	+		BT3528	0.75	-3.5
4,562,985	-		BT3528	0.76	-0.6
4,563,096	+				+0.4
4,563,097	-		BT3528	0.83	-1.5
4,563,115	-		BT3528	0.84	-0.2
4,563,204	+				-0.0
4,563,205	-				-0.6
4,563,330	+				-1.6
4,563,334	-				-1.9
4,563,343	+				-1.1
4,563,363	-				-0.6
4,563,368	+				-1.0
4,563,369	-				-0.6
4,563,590	+		BT3529	0.21	-1.6
4,563,591	-		BT3529	0.21	-3.2
4,563,619	+		BT3529	0.24	-0.8
4,563,620	-		BT3529	0.24	-0.5
4,563,666	+		BT3529	0.28	-0.3
4,563,666	+		BT3529	0.28	-1.0
4,563,730	+		BT3529	0.33	+0.4
4,563,731	-		BT3529	0.33	-0.8
4,563,770	-		BT3529	0.37	-2.8
4,563,858	+		BT3529	0.45	-0.6
4,563,895	-		BT3529	0.48	-1.9
4,563,948	+		BT3529	0.53	-1.2
4,563,964	+		BT3529	0.54	-2.6
4,563,965	-		BT3529	0.54	-1.2
4,564,028	-		BT3529	0.60	-0.2
4,564,030	+		BT3529	0.60	-1.2
4,564,033	-		BT3529	0.60	-1.2
4,564,048	-		BT3529	0.61	-1.7
4,564,178	+		BT3529	0.73	-1.7
4,564,216	-		BT3529	0.76	-1.1
4,564,262	+		BT3529	0.80	+0.4
4,564,263	-		BT3529	0.80	-0.8
4,564,263	-		BT3529	0.80	-0.2
4,564,264	+		BT3529	0.80	-0.1
4,564,264	+				+0.4
4,564,270	-		BT3529	0.81	-0.9
4,564,290	-		BT3529	0.83	-2.4
4,564,291	+		BT3529	0.83	-0.6
4,564,422	-				-0.2
4,564,493	+				-2.9
4,564,495	+				-1.4
4,564,498	+				-0.6
4,564,500	+				-2.9
4,564,506	+				+0.4
4,564,507	-				-0.4
4,564,565	-				-1.0
4,564,595	+				-0.6
4,564,595	+				+0.4
4,564,595	+				+0.7
4,564,655	+				-1.2
4,564,655	+				-2.8
4,564,656	-				-1.2
4,564,698	+				-1.1
4,564,699	-				-1.2
4,564,699	-				-2.0
4,564,778	+				+0.4
4,564,834	+		BT3530	0.11	-1.2
4,564,942	+		BT3530	0.16	+1.4
4,564,942	+		BT3530	0.16	-0.6
4,564,942	+		BT3530	0.16	+0.7
4,564,951	+		BT3530	0.17	-0.8
4,564,997	+		BT3530	0.19	+0.4
4,565,000	-		BT3530	0.19	+0.4
4,565,062	-		BT3530	0.22	-2.4
4,565,062	-		BT3530	0.22	-0.6
4,565,062	-		BT3530	0.22	-1.2
4,565,066	-		BT3530	0.22	-1.2
4,565,066	-		BT3530	0.22	-1.2
4,565,108	+		BT3530	0.25	+0.4
4,565,145	-		BT3530	0.27	-0.9
4,565,153	+		BT3530	0.27	+1.4
4,565,164	-		BT3530	0.27	-0.3
4,565,218	+		BT3530	0.30	+1.2
4,565,420	-		BT3530	0.41	-0.3
4,565,420	-		BT3530	0.41	-1.0
4,565,438	+		BT3530	0.41	-1.6
4,565,439	-		BT3530	0.41	+1.4
4,565,477	+		BT3530	0.43	+0.4