Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3504

Experiment: Amylopectin from Potato; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
4,517,172	-		BT3502	0.29	-0.6
4,517,225	+		BT3502	0.48	+0.4
4,517,237	-		BT3502	0.53	-1.2
4,517,237	-		BT3502	0.53	-1.3
4,517,239	-				-1.2
4,517,239	-		BT3502	0.53	+0.0
4,517,250	-		BT3502	0.57	+0.4
4,517,332	-		BT3502	0.87	-0.6
4,517,377	+				-1.6
4,517,378	-				-1.6
4,517,381	+				+0.8
4,517,386	+				-0.6
4,517,426	-				+1.4
4,517,475	-				+0.4
4,517,494	+				-0.6
4,517,538	-				+2.4
4,517,981	-		BT3503	0.74	-1.5
4,518,132	-				-1.2
4,518,182	+				-0.6
4,518,235	-				-1.2
4,518,257	+				-0.6
4,518,258	-				-0.6
4,518,338	+		BT3504	0.11	+0.4
4,518,339	-		BT3504	0.11	+0.4
4,518,414	+		BT3504	0.16	-0.6
4,518,415	-		BT3504	0.16	-2.0
4,518,434	-		BT3504	0.17	-0.9
4,518,440	-		BT3504	0.17	-2.5
4,518,489	-		BT3504	0.20	-2.2
4,518,534	+		BT3504	0.23	-1.6
4,518,534	+		BT3504	0.23	+0.4
4,518,539	-		BT3504	0.24	+0.4
4,518,557	+		BT3504	0.25	-2.0
4,518,561	+		BT3504	0.25	+0.4
4,518,703	-		BT3504	0.34	-1.6
4,518,720	+				+0.4
4,518,721	-		BT3504	0.35	-0.2
4,518,727	-		BT3504	0.36	-0.9
4,518,780	+		BT3504	0.39	+0.4
4,518,784	-		BT3504	0.39	-0.6
4,518,784	-		BT3504	0.39	-2.8
4,518,820	-		BT3504	0.42	-0.3
4,518,827	+		BT3504	0.42	+0.4
4,518,828	-		BT3504	0.42	+1.4
4,518,828	-		BT3504	0.42	-2.5
4,518,836	-		BT3504	0.43	-1.3
4,518,853	+		BT3504	0.44	+0.4
4,518,853	+		BT3504	0.44	-0.2
4,518,856	-		BT3504	0.44	-1.2
4,518,856	-		BT3504	0.44	-0.6
4,518,863	+		BT3504	0.44	-1.6
4,518,875	-		BT3504	0.45	-0.6
4,518,906	-		BT3504	0.47	-3.5
4,518,906	-		BT3504	0.47	-3.4
4,518,907	+		BT3504	0.47	-0.2
4,518,909	+		BT3504	0.47	-0.6
4,518,913	-		BT3504	0.48	-3.6
4,518,985	-		BT3504	0.52	-2.8
4,518,993	+		BT3504	0.53	-1.3
4,518,997	-		BT3504	0.53	-1.2
4,519,022	-		BT3504	0.55	+0.0
4,519,030	-		BT3504	0.55	-1.6
4,519,033	+		BT3504	0.55	+0.4
4,519,110	+		BT3504	0.60	-1.5
4,519,145	+		BT3504	0.62	-0.6
4,519,146	-		BT3504	0.63	-1.3
4,519,204	+		BT3504	0.66	-2.6
4,519,235	-		BT3504	0.68	-2.6
4,519,235	-		BT3504	0.68	-1.1
4,519,235	-		BT3504	0.68	-1.3
4,519,276	-		BT3504	0.71	+0.4
4,519,306	-		BT3504	0.73	-2.2
4,519,320	+		BT3504	0.74	-1.8
4,519,347	+		BT3504	0.75	-1.6
4,519,347	+		BT3504	0.75	-0.6
4,519,348	-		BT3504	0.76	+1.4
4,519,354	-		BT3504	0.76	-1.7
4,519,449	+		BT3504	0.82	-0.9
4,519,449	+		BT3504	0.82	-2.2
4,519,450	-		BT3504	0.82	+0.4
4,519,472	+		BT3504	0.83	-1.2
4,519,574	+				+0.4
4,519,574	+				-1.2
4,519,617	-				+1.0
4,519,635	+				-0.8
4,519,689	+				-1.4
4,519,745	-				-1.4
4,519,956	+				+0.4
4,520,023	-				-1.2
4,520,049	+				-1.2
4,520,067	+		BT3505	0.10	-1.0
4,520,075	-		BT3505	0.11	-1.6
4,520,112	+		BT3505	0.12	-1.9
4,520,159	-		BT3505	0.13	-2.9
4,520,159	-		BT3505	0.13	+0.4
4,520,194	+		BT3505	0.14	+0.4
4,520,247	+		BT3505	0.16	-1.0
4,520,285	+		BT3505	0.17	-1.2
4,520,288	-		BT3505	0.17	+0.4
4,520,288	-		BT3505	0.17	-0.2
4,520,329	+		BT3505	0.19	-0.2
4,520,383	+		BT3505	0.20	-1.3
4,520,384	-		BT3505	0.20	-0.7
4,520,384	-		BT3505	0.20	-0.4
4,520,384	-		BT3505	0.20	-2.7
4,520,388	-		BT3505	0.21	-1.0
4,520,388	-		BT3505	0.21	-0.6
4,520,415	+		BT3505	0.21	-0.2
4,520,415	+		BT3505	0.21	-2.2
4,520,423	-		BT3505	0.22	-1.9
4,520,477	-		BT3505	0.23	-0.8
4,520,480	+		BT3505	0.24	-0.6
4,520,481	-		BT3505	0.24	-1.3
4,520,482	+		BT3505	0.24	-0.5
4,520,486	-		BT3505	0.24	-0.8
4,520,495	-		BT3505	0.24	-2.2
4,520,599	-		BT3505	0.27	-1.7
4,520,659	-		BT3505	0.29	-2.8