Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3396

Experiment: Amylopectin from Potato; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
4,375,706	+				+0.4
4,375,783	+				-1.6
4,375,783	+				-1.2
4,375,783	+				-0.6
4,375,873	+				-0.6
4,376,009	-		BT3395	0.20	-2.9
4,376,012	+		BT3395	0.20	-2.8
4,376,012	+		BT3395	0.20	-3.6
4,376,013	-		BT3395	0.21	-6.0
4,376,082	+		BT3395	0.29	-2.2
4,376,083	-		BT3395	0.30	-2.4
4,376,208	+		BT3395	0.46	+0.4
4,376,237	-		BT3395	0.49	-4.9
4,376,237	-		BT3395	0.49	-1.9
4,376,316	-		BT3395	0.60	-1.2
4,376,484	+		BT3395	0.81	-4.3
4,376,485	-		BT3395	0.82	+0.4
4,376,522	+		BT3395	0.86	-2.8
4,376,562	-				+0.4
4,376,573	-				-1.5
4,376,604	+				-2.4
4,376,683	-				-0.4
4,376,684	+				-1.2
4,376,685	-				-2.2
4,376,808	-		BT3396	0.23	-0.6
4,376,808	-		BT3396	0.23	-1.2
4,376,860	+		BT3396	0.34	+1.4
4,376,860	+		BT3396	0.34	-0.3
4,376,890	-		BT3396	0.39	-1.5
4,377,006	+		BT3396	0.62	-1.2
4,377,006	+		BT3396	0.62	-0.8
4,377,007	-		BT3396	0.62	-0.3
4,377,007	-		BT3396	0.62	-1.3
4,377,007	-		BT3396	0.62	-3.3
4,377,007	-		BT3396	0.62	-1.9
4,377,012	+		BT3396	0.63	+0.4
4,377,012	+		BT3396	0.63	+0.4
4,377,082	+		BT3396	0.77	-1.2
4,377,194	+				+0.4
4,377,194	+				-2.8
4,377,194	+				-1.9
4,377,196	+				-0.2
4,377,197	-				-2.1
4,377,204	+				-0.9
4,377,204	+				-0.6
4,377,204	+				-1.0
4,377,205	-				+0.4
4,377,352	-		BT3397	0.34	-1.3
4,377,379	+		BT3397	0.40	-1.2
4,377,534	+		BT3397	0.73	-1.5
4,377,662	+				+1.2
4,377,663	-				+1.4
4,377,687	+				-0.9
4,377,687	+				+2.0
4,377,688	-				-0.6
4,377,689	+				-0.4
4,377,689	+				-0.6
4,377,689	+				-1.0
4,377,689	+				+0.2
4,377,690	-				-0.9
4,377,692	+				+0.4
4,377,692	+				+1.4
4,377,692	+				-1.2
4,377,694	+				-0.3
4,377,766	+				-0.2
4,377,783	+				-0.2
4,377,783	+				-0.2
4,377,807	+				-0.4
4,377,841	+				-0.3
4,377,846	+				-1.0
4,377,847	-				-0.9
4,377,985	+		BT3398	0.18	+0.4
4,377,987	+		BT3398	0.19	-1.6
4,377,988	-		BT3398	0.19	-0.8
4,378,036	-		BT3398	0.25	-1.7
4,378,036	-		BT3398	0.25	-0.6