Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3320
Experiment: Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Amylopectin from Potato; autoclaved 2.5 mg/ml (C) |
---|---|---|---|---|---|
remove | |||||
4,263,554 | - | -1.9 | |||
4,263,985 | - | BT3320 | 0.53 | -4.4 | |
4,264,074 | - | BT3320 | 0.64 | -5.4 | |
4,264,119 | - | BT3320 | 0.70 | -3.8 | |
4,264,163 | - | BT3320 | 0.76 | -3.5 | |
4,264,163 | - | BT3320 | 0.76 | -1.2 | |
4,264,172 | - | BT3320 | 0.77 | -1.2 | |
4,264,204 | - | BT3320 | 0.81 | +0.4 | |
4,264,260 | - | BT3320 | 0.89 | -3.6 | |
4,264,449 | - | +0.4 | |||
4,264,504 | - | -1.8 | |||
4,264,604 | - | BT3321 | 0.14 | -1.2 | |
4,264,604 | - | BT3321 | 0.14 | +0.8 | |
4,264,612 | - | BT3321 | 0.14 | -1.5 | |
4,264,612 | - | BT3321 | 0.14 | -1.2 | |
4,264,612 | - | BT3321 | 0.14 | -0.0 | |
4,264,657 | + | BT3321 | 0.18 | -2.4 | |
4,264,664 | + | BT3321 | 0.18 | -1.3 | |
4,264,746 | + | BT3321 | 0.25 | -0.6 | |
4,264,805 | + | BT3321 | 0.29 | -0.6 | |
4,265,119 | - | BT3321 | 0.54 | -0.8 | |
4,265,141 | + | BT3321 | 0.55 | -1.6 | |
4,265,142 | - | BT3321 | 0.55 | -1.2 | |
4,265,143 | + | BT3321 | 0.56 | -1.0 | |
4,265,280 | - | BT3321 | 0.66 | +0.1 | |
4,265,299 | + | BT3321 | 0.68 | +1.4 |
Or see this region's nucleotide sequence