Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3191

Experiment: Amylopectin from Potato; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
4,079,908	-		BT3189	0.69	-1.6
4,079,912	+		BT3189	0.70	+1.4
4,079,912	+		BT3189	0.70	-2.2
4,079,915	+		BT3189	0.70	-2.6
4,079,916	-		BT3189	0.70	-1.6
4,079,921	+		BT3189	0.70	-0.9
4,079,922	-		BT3189	0.71	-0.6
4,079,979	-		BT3189	0.75	-0.6
4,080,048	-		BT3189	0.80	-0.2
4,080,091	+		BT3189	0.84	-0.2
4,080,092	-		BT3189	0.84	-0.9
4,080,094	+		BT3189	0.84	-2.2
4,080,094	+		BT3189	0.84	+0.4
4,080,094	+		BT3189	0.84	-1.1
4,080,094	+		BT3189	0.84	-2.0
4,080,095	-		BT3189	0.84	+1.4
4,080,099	-		BT3189	0.84	-1.0
4,080,131	-		BT3189	0.87	-0.1
4,080,131	-		BT3189	0.87	-2.2
4,080,134	+		BT3189	0.87	-1.2
4,080,135	-		BT3189	0.87	-1.4
4,080,179	+				-0.8
4,080,182	+				+0.0
4,080,183	-				-1.2
4,080,183	-				-1.6
4,080,183	-				-1.7
4,080,200	-				-0.6
4,080,234	-				-1.6
4,080,235	+				-1.1
4,080,235	+				+2.0
4,080,236	-				+0.4
4,080,236	-				+0.4
4,080,284	-				-1.1
4,080,284	-				-1.0
4,080,306	+				+0.4
4,080,395	+		BT3190	0.16	-1.9
4,080,395	+		BT3190	0.16	+0.4
4,080,404	+		BT3190	0.18	-0.8
4,080,430	+		BT3190	0.22	-1.2
4,080,516	-		BT3190	0.37	-0.6
4,080,539	-				+0.0
4,080,539	-		BT3190	0.41	-0.6
4,080,560	+		BT3190	0.44	-1.6
4,080,561	-		BT3190	0.44	-0.6
4,080,562	+		BT3190	0.45	-1.4
4,080,563	-		BT3190	0.45	+2.0
4,080,596	-		BT3190	0.50	-2.2
4,080,598	-		BT3190	0.51	-1.2
4,080,598	-		BT3190	0.51	-2.2
4,080,615	+		BT3190	0.53	-0.2
4,080,644	-		BT3190	0.58	-0.6
4,080,648	-		BT3190	0.59	-0.6
4,080,648	-		BT3190	0.59	-0.9
4,080,748	+		BT3190	0.76	-2.2
4,080,749	-		BT3190	0.76	-1.2
4,080,819	+		BT3190	0.88	-1.4
4,080,832	-				-0.8
4,080,837	-				-1.9
4,080,850	-				+0.4
4,080,873	-				+0.4
4,080,873	-				-1.0
4,080,873	-				+0.1
4,080,961	+		BT3191	0.10	-0.7
4,080,971	+		BT3191	0.12	-2.6
4,081,167	+		BT3191	0.42	-1.4
4,081,167	+		BT3191	0.42	-2.7
4,081,168	-		BT3191	0.43	-1.2
4,081,346	-		BT3191	0.70	-3.5
4,081,360	+		BT3191	0.73	-1.8
4,081,408	+		BT3191	0.80	-3.3
4,081,451	-		BT3191	0.87	-1.9
4,081,493	-				-1.6
4,081,528	+				-1.2
4,081,528	+				-1.6
4,081,529	-				+0.4
4,081,560	+				-1.2
4,081,564	+				-1.0
4,081,575	-				+0.8
4,081,623	-				+0.4
4,081,624	+				+0.0
4,081,624	+				+0.4
4,081,636	+		BT3192	0.10	-1.1
4,081,636	+		BT3192	0.10	-2.2
4,081,646	+		BT3192	0.12	-1.0
4,081,647	-		BT3192	0.12	+0.0
4,081,647	-		BT3192	0.12	+0.4
4,081,703	+		BT3192	0.19	+1.4
4,081,704	-		BT3192	0.19	+0.4
4,081,704	-		BT3192	0.19	-1.6
4,081,704	-		BT3192	0.19	-1.3
4,081,704	-		BT3192	0.19	-1.5
4,081,903	+		BT3192	0.46	-1.2
4,081,910	-		BT3192	0.47	-1.8
4,081,931	-		BT3192	0.50	-1.7
4,081,931	-		BT3192	0.50	-1.6
4,081,973	+		BT3192	0.55	-0.2
4,081,976	-		BT3192	0.56	+0.4
4,081,978	+		BT3192	0.56	-0.9
4,082,035	+		BT3192	0.63	-0.6
4,082,046	-		BT3192	0.65	-1.4
4,082,062	+		BT3192	0.67	-2.0
4,082,063	-		BT3192	0.67	-0.6
4,082,066	+		BT3192	0.68	-1.3
4,082,067	-		BT3192	0.68	-1.2
4,082,068	+		BT3192	0.68	-0.6
4,082,068	+		BT3192	0.68	-1.3
4,082,068	+		BT3192	0.68	-1.4
4,082,068	+		BT3192	0.68	-0.6
4,082,069	-		BT3192	0.68	-0.8
4,082,092	+		BT3192	0.71	+0.7
4,082,092	+		BT3192	0.71	-1.8
4,082,137	+		BT3192	0.77	-0.7
4,082,138	-		BT3192	0.77	-1.7
4,082,139	+		BT3192	0.77	-1.3
4,082,139	+		BT3192	0.77	-0.8
4,082,161	-		BT3192	0.80	-2.2
4,082,289	-				-1.5
4,082,289	-				-1.0
4,082,313	+				+0.4
4,082,313	+				-1.9
4,082,457	+				-3.5
4,082,529	-		BT3193	0.14	-0.6