Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3169

Experiment: Amylopectin from Potato; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
4,039,684	-				-1.6
4,039,727	+				-1.9
4,039,733	+				+2.8
4,039,734	-				+0.4
4,039,734	-				-1.5
4,039,747	-				-1.6
4,039,981	-		BT3168	0.40	-2.4
4,040,022	-		BT3168	0.45	-2.4
4,040,022	-		BT3168	0.45	-0.7
4,040,027	+		BT3168	0.45	-0.6
4,040,027	+		BT3168	0.45	-0.6
4,040,064	-		BT3168	0.50	+0.4
4,040,084	+		BT3168	0.53	-1.2
4,040,084	+		BT3168	0.53	-1.9
4,040,084	+		BT3168	0.53	-1.2
4,040,085	-		BT3168	0.53	-0.6
4,040,088	+		BT3168	0.53	+0.8
4,040,089	-		BT3168	0.53	-1.2
4,040,159	-		BT3168	0.63	-0.6
4,040,236	-		BT3168	0.72	-0.8
4,040,259	+		BT3168	0.75	+0.4
4,040,259	+		BT3168	0.75	-1.6
4,040,260	-		BT3168	0.76	-1.2
4,040,263	-		BT3168	0.76	-2.4
4,040,403	-				-2.7
4,040,443	+				-0.7
4,040,444	-				-2.6
4,040,444	-				+1.4
4,040,463	-				-1.2
4,040,468	-				+0.4
4,040,468	-				-0.2
4,040,476	+				+2.0
4,040,518	-				-0.2
4,040,603	-				-0.2
4,040,606	+				+0.4
4,040,627	-				+0.4
4,040,640	-				-0.9
4,040,640	-				-1.0
4,040,654	-				+0.4
4,040,717	+				-1.0
4,040,718	-				-1.6
4,040,721	-				+0.4
4,040,732	-				-1.1
4,040,737	+				-1.6
4,040,761	+				-1.6
4,040,763	+				-0.2
4,040,872	+				-1.4
4,040,873	-				-2.2
4,040,873	-				-0.3
4,040,873	-				+0.4
4,041,053	+				-1.3
4,041,054	-				-1.1
4,041,054	-				-0.9
4,041,190	+		BT3169	0.13	-0.2
4,041,217	-		BT3169	0.14	-2.3
4,041,217	-		BT3169	0.14	-1.0
4,041,338	+		BT3169	0.17	-1.1
4,041,338	+		BT3169	0.17	-1.1
4,041,363	+		BT3169	0.18	+0.4
4,041,364	-		BT3169	0.18	-1.3
4,041,384	+		BT3169	0.18	-0.9
4,041,413	-		BT3169	0.19	-1.3
4,041,438	+		BT3169	0.20	-0.1
4,041,438	+		BT3169	0.20	-2.2
4,041,453	+		BT3169	0.20	-0.6
4,041,455	+		BT3169	0.20	-0.1
4,041,561	+		BT3169	0.23	-0.6
4,041,562	-		BT3169	0.23	-1.2
4,041,731	+		BT3169	0.27	-2.7
4,041,731	+		BT3169	0.27	+0.4
4,041,732	-		BT3169	0.27	-0.4
4,041,899	+		BT3169	0.31	+0.0
4,041,899	+		BT3169	0.31	+0.4
4,041,899	+		BT3169	0.31	+0.8
4,041,899	+		BT3169	0.31	-1.0
4,041,900	-		BT3169	0.32	+0.2
4,041,901	+		BT3169	0.32	-1.9
4,041,901	+		BT3169	0.32	-0.6
4,041,902	-		BT3169	0.32	-0.9
4,041,902	-		BT3169	0.32	-0.4
4,042,024	+		BT3169	0.35	-1.5
4,042,031	+		BT3169	0.35	-2.0
4,042,031	+		BT3169	0.35	-1.2
4,042,032	-		BT3169	0.35	-1.3
4,042,032	-		BT3169	0.35	-0.6
4,042,032	-		BT3169	0.35	+0.8
4,042,032	-		BT3169	0.35	-2.0
4,042,035	-		BT3169	0.35	-2.1
4,042,041	+				-1.9
4,042,041	+		BT3169	0.35	-1.2
4,042,152	-		BT3169	0.38	+0.4
4,042,173	+		BT3169	0.39	-1.9
4,042,173	+		BT3169	0.39	-1.2
4,042,173	+		BT3169	0.39	-2.9
4,042,173	+		BT3169	0.39	-2.3
4,042,173	+		BT3169	0.39	-0.2
4,042,174	-		BT3169	0.39	+0.4
4,042,174	-		BT3169	0.39	+1.8
4,042,174	-		BT3169	0.39	-1.6
4,042,175	+		BT3169	0.39	+0.4
4,042,177	+		BT3169	0.39	-1.2
4,042,178	-		BT3169	0.39	-1.9
4,042,178	-		BT3169	0.39	-0.9
4,042,258	+		BT3169	0.41	+1.4
4,042,356	-		BT3169	0.43	-2.5
4,042,371	-		BT3169	0.44	-2.0
4,042,411	-		BT3169	0.45	-0.7
4,042,411	-		BT3169	0.45	-0.3
4,042,413	-		BT3169	0.45	-0.8
4,042,439	+		BT3169	0.45	+0.4
4,042,482	+		BT3169	0.46	-0.2
4,042,484	+		BT3169	0.47	+0.4
4,042,488	+		BT3169	0.47	-0.6
4,042,512	+		BT3169	0.47	+0.0
4,042,512	+		BT3169	0.47	-1.6
4,042,514	+		BT3169	0.47	-1.9
4,042,515	-		BT3169	0.47	-1.2
4,042,515	-		BT3169	0.47	-1.2
4,042,515	-		BT3169	0.47	+0.4
4,042,518	+		BT3169	0.47	+2.0
4,042,519	-		BT3169	0.47	+0.4
4,042,622	-		BT3169	0.50	-2.6
4,042,645	-		BT3169	0.51	-0.2
4,042,745	+		BT3169	0.53	-1.5
4,042,745	+		BT3169	0.53	-1.4
4,042,746	-		BT3169	0.53	-1.2
4,042,803	-		BT3169	0.55	-0.6
4,042,803	-		BT3169	0.55	+0.4
4,043,047	+		BT3169	0.61	-0.3
4,043,047	+		BT3169	0.61	-2.6
4,043,115	-		BT3169	0.63	-1.2
4,043,305	+		BT3169	0.68	-0.6
4,043,306	-		BT3169	0.68	-1.6
4,043,328	+		BT3169	0.68	-1.0
4,043,329	-		BT3169	0.68	-1.3
4,043,329	-		BT3169	0.68	-1.2
4,043,356	+		BT3169	0.69	+1.2
4,043,370	+		BT3169	0.69	-0.6
4,043,373	+		BT3169	0.69	-0.5
4,043,400	+		BT3169	0.70	-1.9
4,043,458	-		BT3169	0.72	-1.1
4,043,531	+		BT3169	0.73	-1.2
4,043,531	+		BT3169	0.73	-0.3
4,043,531	+		BT3169	0.73	+0.4
4,043,549	+		BT3169	0.74	-1.0
4,043,636	+		BT3169	0.76	-1.3
4,043,637	-		BT3169	0.76	-1.4
4,043,637	-		BT3169	0.76	-1.2
4,043,637	-				+1.0
4,043,637	-		BT3169	0.76	+1.4
4,043,653	-		BT3169	0.77	-1.6
4,043,655	-		BT3169	0.77	-1.2
4,043,660	+		BT3169	0.77	-1.1
4,043,661	-		BT3169	0.77	-1.9
4,043,668	+		BT3169	0.77	-0.7
4,043,668	+		BT3169	0.77	-0.2
4,043,668	+		BT3169	0.77	-2.6
4,043,675	-		BT3169	0.77	-1.4
4,043,675	-		BT3169	0.77	-1.6
4,043,714	+		BT3169	0.78	-1.2
4,043,724	+		BT3169	0.78	+0.4
4,043,729	-		BT3169	0.79	-0.7
4,043,754	-		BT3169	0.79	-1.2
4,043,773	+		BT3169	0.80	-1.9
4,043,778	+		BT3169	0.80	+0.4
4,043,778	+		BT3169	0.80	-1.0
4,043,779	-		BT3169	0.80	+0.4
4,043,779	-		BT3169	0.80	-1.2
4,043,783	+		BT3169	0.80	-1.2
4,043,843	-		BT3169	0.82	-1.9
4,043,881	-		BT3169	0.82	+0.4
4,043,908	+		BT3169	0.83	-1.3
4,044,024	+		BT3169	0.86	-0.6
4,044,024	+		BT3169	0.86	-0.7
4,044,033	+		BT3169	0.86	+0.4
4,044,033	+		BT3169	0.86	+1.2
4,044,075	-		BT3169	0.87	-0.6
4,044,109	+		BT3169	0.88	+0.1
4,044,110	-		BT3169	0.88	-1.4
4,044,117	+		BT3169	0.89	-1.6
4,044,118	-		BT3169	0.89	-1.6
4,044,118	-		BT3169	0.89	-1.3
4,044,182	-				-0.6
4,044,198	-				-1.2
4,044,285	-				+0.4
4,044,285	-				-0.8
4,044,325	+				-0.9
4,044,345	-				+0.2
4,044,370	-				-1.2
4,044,384	-				-1.0
4,044,384	-				+0.4
4,044,464	+				-2.1
4,044,489	-				-1.8
4,044,564	+				+1.0
4,044,584	+				+0.4
4,044,586	+				-3.0
4,044,587	-				-1.6
4,044,587	-				+0.4
4,044,615	+				-1.2
4,044,616	-				+0.6
4,044,658	+				-1.8
4,044,660	+				-1.5
4,044,661	-				-1.6
4,044,666	+				-0.6
4,044,666	+				-0.6
4,044,667	-				-0.6
4,044,670	+				-1.2
4,044,671	-				-1.4
4,044,672	+				-0.8
4,044,673	-				-0.9
4,044,675	+				-1.2
4,044,701	-				-0.4
4,044,701	-				-2.6
4,044,706	+				-1.2
4,044,733	-				-0.1
4,044,764	+				-1.4
4,044,797	-				-1.6
4,044,801	-				-0.9
4,044,802	+				-1.8
4,044,818	+				-0.7
4,044,818	+				-1.2
4,044,826	+				-0.7
4,044,845	-				-2.3
4,044,845	-				+0.4
4,044,890	+		BT3170	0.16	-1.1
4,044,946	+		BT3170	0.23	-2.5
4,044,979	-		BT3170	0.27	-2.0
4,044,985	+		BT3170	0.28	-0.6
4,044,986	-		BT3170	0.28	-2.6
4,045,133	-		BT3170	0.48	-1.4
4,045,137	+		BT3170	0.48	-1.2
4,045,145	+		BT3170	0.49	-0.9
4,045,207	-		BT3170	0.57	+0.4
4,045,334	+		BT3170	0.74	-1.2
4,045,410	-		BT3170	0.84	+0.4
4,045,430	+		BT3170	0.86	-1.2
4,045,431	-		BT3170	0.87	-0.6
4,045,431	-		BT3170	0.87	+0.4
4,045,441	-		BT3170	0.88	-1.0
4,045,442	+		BT3170	0.88	-0.8
4,045,456	+				-1.2
4,045,457	-				-1.2
4,045,497	-				-0.2
4,045,497	-				-0.2
4,045,500	+				-1.2
4,045,500	+				-0.8
4,045,501	-				+0.4
4,045,501	-				-0.7
4,045,501	-				-1.0
4,045,522	-				-0.4
4,045,522	-				-0.7
4,045,544	+				-1.4
4,045,549	-				-0.3
4,045,557	+				-1.0
4,045,558	-				-0.6