Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2849

Experiment: Amylopectin from Potato; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
3,553,154	+		BT2848	0.45	-1.1
3,553,290	+		BT2848	0.56	-3.4
3,553,306	-		BT2848	0.58	-0.9
3,553,311	+		BT2848	0.58	-0.8
3,553,314	+		BT2848	0.58	-0.8
3,553,314	+		BT2848	0.58	-1.1
3,553,315	-		BT2848	0.58	-1.6
3,553,317	+		BT2848	0.58	+0.0
3,553,318	-		BT2848	0.59	+1.4
3,553,318	-		BT2848	0.59	-2.6
3,553,320	+		BT2848	0.59	-2.3
3,553,379	-		BT2848	0.64	-0.9
3,553,385	-		BT2848	0.64	-1.5
3,553,385	-		BT2848	0.64	-1.6
3,553,386	+		BT2848	0.64	-1.9
3,553,554	+		BT2848	0.78	-0.4
3,553,554	+				-1.9
3,553,560	-		BT2848	0.79	-1.1
3,553,560	-		BT2848	0.79	-0.7
3,553,563	+		BT2848	0.79	-0.6
3,553,586	-		BT2848	0.81	-1.6
3,553,586	-		BT2848	0.81	-0.1
3,553,657	+		BT2848	0.87	+0.4
3,553,657	+		BT2848	0.87	+0.4
3,553,658	-		BT2848	0.87	-1.3
3,553,686	-		BT2848	0.89	+0.4
3,553,709	+				+0.4
3,553,817	-				-0.4
3,553,817	-				+0.1
3,553,861	-				-1.1
3,553,958	+				-1.6
3,553,963	+				-1.0
3,553,963	+				+0.4
3,554,052	+				-2.4
3,554,052	+				+0.0
3,554,052	+				-0.1
3,554,132	+				-0.8
3,554,133	-				-0.9
3,554,155	+				-1.1
3,554,176	+				-2.4
3,554,176	+				+1.4
3,554,177	-				-0.9
3,554,351	+		BT2849	0.20	+1.4
3,554,352	-		BT2849	0.20	+0.4
3,554,355	-		BT2849	0.21	-1.1
3,554,422	+		BT2849	0.27	+0.4
3,554,426	+		BT2849	0.28	+0.4
3,554,427	-		BT2849	0.28	+0.4
3,554,493	+		BT2849	0.34	-0.1
3,554,574	+		BT2849	0.42	-0.9
3,554,650	+		BT2849	0.50	+0.4
3,554,654	+		BT2849	0.50	-2.4
3,554,655	-		BT2849	0.50	-1.2
3,554,678	+		BT2849	0.52	-1.2
3,554,679	-		BT2849	0.52	-2.6
3,554,731	-		BT2849	0.58	-0.4
3,554,749	-		BT2849	0.59	-2.4
3,554,847	-		BT2849	0.69	-1.6
3,554,882	+		BT2849	0.72	-0.3
3,554,894	+		BT2849	0.74	-0.7
3,554,895	-		BT2849	0.74	-2.1
3,554,895	-		BT2849	0.74	+2.4
3,554,897	-		BT2849	0.74	-1.4
3,554,941	-		BT2849	0.78	-0.6
3,555,000	+		BT2849	0.84	-1.1
3,555,003	+		BT2849	0.84	-0.9
3,555,004	-		BT2849	0.85	-2.1
3,555,006	-		BT2849	0.85	+0.4
3,555,045	+		BT2849	0.89	-0.3
3,555,046	-		BT2849	0.89	-0.1
3,555,046	-		BT2849	0.89	+0.5
3,555,046	-		BT2849	0.89	-0.1
3,555,046	-		BT2849	0.89	-1.1
3,555,062	+				+0.4
3,555,126	-				+0.4
3,555,139	+				-0.1
3,555,145	+				-0.9
3,555,175	+				-0.6
3,555,180	-				-1.7
3,555,193	-				-1.0
3,555,193	-				-0.9
3,555,229	-				-0.6
3,555,231	-				-0.6
3,555,231	-				-0.7
3,555,248	-				-0.6
3,555,286	+				-1.7
3,555,303	+				+0.9
3,555,303	+				-2.6
3,555,342	-				-0.7
3,555,485	-		BT2850	0.13	-0.4
3,555,487	-		BT2850	0.13	-1.4
3,555,487	-		BT2850	0.13	-0.6
3,555,497	-		BT2850	0.14	-1.2
3,555,513	+		BT2850	0.15	-0.8
3,555,513	+		BT2850	0.15	+0.6
3,555,514	-		BT2850	0.15	+2.0
3,555,562	+		BT2850	0.18	-0.6
3,555,653	+		BT2850	0.24	-1.8
3,555,653	+		BT2850	0.24	-1.7
3,555,653	+		BT2850	0.24	-1.8
3,555,755	+		BT2850	0.30	-2.1
3,555,770	+		BT2850	0.31	-1.9
3,555,776	+		BT2850	0.31	-1.9
3,555,779	-		BT2850	0.32	+0.4
3,555,834	-		BT2850	0.35	-1.6
3,555,834	-		BT2850	0.35	-1.0
3,555,852	-		BT2850	0.36	+0.4
3,555,857	-		BT2850	0.37	+1.3
3,555,857	-		BT2850	0.37	-0.1
3,555,873	-		BT2850	0.38	+1.0
3,555,873	-		BT2850	0.38	-2.0
3,555,928	+		BT2850	0.41	+0.4
3,555,928	+		BT2850	0.41	-1.9
3,555,928	+		BT2850	0.41	+0.4
3,555,929	-		BT2850	0.41	+0.9
3,555,944	-		BT2850	0.42	-2.0
3,555,949	-		BT2850	0.43	-0.9
3,555,949	-		BT2850	0.43	-1.0
3,555,964	-		BT2850	0.44	-0.1
3,556,032	+		BT2850	0.48	-0.8
3,556,033	-		BT2850	0.48	-0.6
3,556,053	+		BT2850	0.49	+1.4
3,556,054	-		BT2850	0.49	-1.8
3,556,067	+		BT2850	0.50	-0.6
3,556,067	+		BT2850	0.50	-1.1
3,556,067	+		BT2850	0.50	-1.3
3,556,067	+		BT2850	0.50	+1.0
3,556,068	-		BT2850	0.50	+0.4
3,556,095	+		BT2850	0.52	+0.1
3,556,095	+		BT2850	0.52	-1.3
3,556,095	+		BT2850	0.52	-0.9
3,556,096	-		BT2850	0.52	+1.2
3,556,099	+		BT2850	0.52	-0.9
3,556,108	-		BT2850	0.53	-1.6
3,556,135	-		BT2850	0.55	+1.4