Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2402

Experiment: Amylopectin from Potato; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
2,996,810	+		BT2401	0.23	-0.6
2,996,811	-		BT2401	0.23	-2.6
2,996,811	-		BT2401	0.23	-3.8
2,996,901	-		BT2401	0.30	-3.6
2,996,910	+		BT2401	0.31	-2.1
2,996,938	+		BT2401	0.33	-3.6
2,996,938	+		BT2401	0.33	-2.1
2,996,956	+		BT2401	0.34	-0.6
2,996,956	+		BT2401	0.34	+0.4
2,996,956	+		BT2401	0.34	+0.4
2,996,957	-		BT2401	0.34	+0.4
2,997,115	+		BT2401	0.46	-3.8
2,997,116	-		BT2401	0.46	-2.1
2,997,116	-		BT2401	0.46	-4.0
2,997,122	-		BT2401	0.47	-1.6
2,997,128	-		BT2401	0.47	-3.5
2,997,128	-		BT2401	0.47	-4.0
2,997,156	+		BT2401	0.50	-3.7
2,997,276	-		BT2401	0.59	-1.6
2,997,343	+		BT2401	0.64	-1.6
2,997,344	-		BT2401	0.64	-2.1
2,997,345	+		BT2401	0.64	-2.7
2,997,346	-		BT2401	0.64	-3.9
2,997,346	-		BT2401	0.64	-2.1
2,997,486	+		BT2401	0.75	-1.6
2,997,532	+		BT2401	0.78	-3.7
2,997,532	+		BT2401	0.78	-1.6
2,997,533	-		BT2401	0.78	-0.6
2,997,583	+		BT2401	0.82	-2.7
2,997,583	+		BT2401	0.82	-4.1
2,997,589	-		BT2401	0.83	-3.5
2,997,675	+		BT2401	0.89	-1.6
2,997,680	+		BT2401	0.90	-0.6
2,997,681	-		BT2401	0.90	-4.9
2,997,681	-		BT2401	0.90	-4.6
2,997,710	+				-1.9
2,997,798	-				-3.4
2,997,805	+				-1.1
2,997,806	-				-1.9
2,997,842	+				-1.9
2,997,890	+				-1.6
2,997,901	-				-5.7
2,997,901	-				-6.0
2,997,952	+		BT2402	0.12	-0.6
2,997,989	-		BT2402	0.15	-3.4
2,998,048	-		BT2402	0.20	-2.3
2,998,058	+		BT2402	0.20	-2.7
2,998,058	+		BT2402	0.20	-1.6
2,998,190	+		BT2402	0.31	-1.6
2,998,195	+		BT2402	0.32	-2.4
2,998,210	+		BT2402	0.33	-1.9
2,998,215	+		BT2402	0.33	-2.0
2,998,215	+		BT2402	0.33	-0.6
2,998,215	+		BT2402	0.33	-1.1
2,998,216	-		BT2402	0.33	+0.4
2,998,216	-		BT2402	0.33	-2.4
2,998,250	+		BT2402	0.36	-2.7
2,998,250	+		BT2402	0.36	-2.9
2,998,298	-		BT2402	0.40	+0.4
2,998,454	-		BT2402	0.53	-1.9
2,998,460	-		BT2402	0.53	-1.6
2,998,471	+		BT2402	0.54	-2.7
2,998,471	+		BT2402	0.54	-2.9
2,998,574	-		BT2402	0.62	-2.1
2,998,618	+		BT2402	0.66	-2.6
2,998,659	+		BT2402	0.69	-2.3
2,998,660	-		BT2402	0.70	-2.9
2,998,660	-		BT2402	0.70	-1.6
2,998,691	+		BT2402	0.72	-4.8
2,998,691	+		BT2402	0.72	-0.6
2,998,692	-		BT2402	0.72	-0.6
2,998,692	-		BT2402	0.72	-1.9
2,998,693	+		BT2402	0.72	-2.6
2,998,693	+		BT2402	0.72	-2.1
2,998,693	+		BT2402	0.72	-0.6
2,998,693	+		BT2402	0.72	-1.6
2,998,693	+		BT2402	0.72	-2.6
2,998,694	-		BT2402	0.72	-1.9
2,998,694	-		BT2402	0.72	-0.6
2,998,694	-		BT2402	0.72	-4.1
2,998,694	-		BT2402	0.72	-0.1
2,998,694	-		BT2402	0.72	-4.8
2,998,744	+		BT2402	0.76	-6.3
2,998,836	+		BT2402	0.84	-0.6
2,998,936	+				-1.1
2,998,938	+				-2.1
2,998,939	-				-0.6
2,999,020	+				-6.1
2,999,020	+				-2.7
2,999,023	+				-0.6
2,999,024	-				-3.3
2,999,024	-				-1.6
2,999,024	-				-2.9
2,999,035	+				-1.1
2,999,071	+				-0.6
2,999,143	+				-1.9
2,999,144	-				-1.9
2,999,276	-				-5.0
2,999,291	+				-2.1
2,999,291	+				-0.6
2,999,588	+		BT2403	0.22	-0.6
2,999,589	-		BT2403	0.22	-3.4
2,999,611	+		BT2403	0.23	-1.6
2,999,611	+		BT2403	0.23	-3.0
2,999,612	-		BT2403	0.23	-3.6
2,999,647	+		BT2403	0.25	-4.8
2,999,666	+		BT2403	0.25	-3.6
2,999,666	+		BT2403	0.25	-4.1
2,999,666	+				-1.9
2,999,667	-		BT2403	0.25	-4.3
2,999,667	-		BT2403	0.25	-1.6
2,999,789	+		BT2403	0.30	-3.4
2,999,843	+		BT2403	0.33	-2.4
2,999,844	-		BT2403	0.33	-2.1
2,999,857	+		BT2403	0.33	-2.1
2,999,858	-		BT2403	0.33	+0.4
2,999,870	+		BT2403	0.34	+0.4