Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2302
Experiment: Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Amylopectin from Potato; autoclaved 2.5 mg/ml (C) |
---|---|---|---|---|---|
remove | |||||
2,876,056 | + | BT2300 | 0.61 | -1.4 | |
2,876,057 | - | BT2300 | 0.62 | -0.6 | |
2,876,172 | - | -1.1 | |||
2,876,231 | + | -0.1 | |||
2,876,270 | + | -1.1 | |||
2,876,416 | + | BT2301 | 0.14 | -0.6 | |
2,876,430 | + | BT2301 | 0.16 | +0.4 | |
2,877,005 | + | -1.6 | |||
2,877,005 | + | +0.4 | |||
2,877,009 | + | -2.4 | |||
2,877,015 | + | -0.6 | |||
2,877,019 | + | -0.6 | |||
2,877,218 | + | BT2302 | 0.46 | -2.6 | |
2,877,391 | + | +0.4 | |||
2,877,415 | - | +0.4 | |||
2,877,419 | + | -0.6 | |||
2,877,419 | + | +0.4 | |||
2,877,419 | + | -1.5 | |||
2,877,522 | + | BT2303 | 0.14 | -1.9 | |
2,877,522 | + | BT2303 | 0.14 | -3.0 | |
2,877,623 | + | BT2303 | 0.27 | +1.0 | |
2,877,624 | - | BT2303 | 0.27 | +0.4 | |
2,877,668 | + | BT2303 | 0.33 | +0.4 | |
2,877,782 | + | BT2303 | 0.48 | -1.4 | |
2,877,782 | + | BT2303 | 0.48 | -2.1 | |
2,878,091 | + | BT2303 | 0.89 | -1.5 | |
2,878,190 | + | +0.4 | |||
2,878,324 | + | -1.1 | |||
2,878,324 | + | -1.0 |
Or see this region's nucleotide sequence