Experiment: Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT2145 and BT2146 are separated by 131 nucleotides BT2146 and BT2147 are separated by 212 nucleotides
BT2145: BT2145 - ribonucleoside-diphosphate reductase alpha chain (NCBI ptt file), at 2,700,124 to 2,702,514
BT2145
BT2146: BT2146 - 4-alpha-glucanotransferase (NCBI ptt file), at 2,702,646 to 2,705,327
BT2146
BT2147: BT2147 - O-acetyl transferase (NCBI ptt file), at 2,705,540 to 2,706,553
BT2147
Position (kb)
2702
2703
2704
2705
2706 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6 at 2701.699 kb on + strand, within BT2145 at 2701.700 kb on - strand, within BT2145 at 2701.700 kb on - strand, within BT2145 at 2701.702 kb on + strand, within BT2145 at 2701.703 kb on - strand, within BT2145 at 2701.724 kb on + strand, within BT2145 at 2701.725 kb on - strand, within BT2145 at 2701.841 kb on - strand, within BT2145 at 2701.844 kb on + strand, within BT2145 at 2701.875 kb on + strand, within BT2145 at 2701.880 kb on + strand, within BT2145 at 2701.883 kb on - strand, within BT2145 at 2702.053 kb on + strand, within BT2145 at 2702.068 kb on + strand, within BT2145 at 2702.069 kb on - strand, within BT2145 at 2702.106 kb on + strand, within BT2145 at 2702.139 kb on + strand, within BT2145 at 2702.140 kb on - strand, within BT2145 at 2702.140 kb on - strand, within BT2145 at 2702.142 kb on + strand, within BT2145 at 2702.142 kb on + strand, within BT2145 at 2702.154 kb on - strand, within BT2145 at 2702.196 kb on + strand, within BT2145 at 2702.395 kb on + strand at 2702.395 kb on + strand at 2702.395 kb on + strand at 2702.512 kb on + strand at 2702.524 kb on + strand at 2702.533 kb on + strand at 2702.533 kb on + strand at 2702.538 kb on + strand at 2702.587 kb on - strand at 2702.604 kb on - strand at 2702.639 kb on - strand at 2702.643 kb on + strand at 2702.643 kb on + strand at 2702.644 kb on - strand at 2702.644 kb on - strand at 2702.645 kb on + strand at 2702.646 kb on - strand at 2702.749 kb on + strand at 2702.749 kb on + strand at 2702.751 kb on + strand at 2702.751 kb on + strand at 2702.751 kb on + strand at 2702.806 kb on - strand at 2702.886 kb on - strand at 2702.902 kb on - strand at 2702.943 kb on + strand, within BT2146 at 2702.946 kb on + strand, within BT2146 at 2702.978 kb on - strand, within BT2146 at 2702.978 kb on - strand, within BT2146 at 2703.218 kb on + strand, within BT2146 at 2703.264 kb on + strand, within BT2146 at 2703.319 kb on - strand, within BT2146 at 2703.325 kb on - strand, within BT2146 at 2703.325 kb on - strand, within BT2146 at 2703.356 kb on + strand, within BT2146 at 2703.358 kb on + strand, within BT2146 at 2703.446 kb on - strand, within BT2146 at 2703.466 kb on + strand, within BT2146 at 2703.466 kb on + strand, within BT2146 at 2703.488 kb on + strand, within BT2146 at 2703.525 kb on + strand, within BT2146 at 2703.527 kb on + strand, within BT2146 at 2703.528 kb on - strand, within BT2146 at 2703.528 kb on - strand, within BT2146 at 2703.530 kb on + strand, within BT2146 at 2703.530 kb on + strand, within BT2146 at 2703.533 kb on + strand, within BT2146 at 2703.571 kb on + strand, within BT2146 at 2703.572 kb on - strand, within BT2146 at 2703.572 kb on - strand, within BT2146 at 2703.801 kb on + strand, within BT2146 at 2703.860 kb on + strand, within BT2146 at 2703.860 kb on + strand, within BT2146 at 2703.861 kb on - strand, within BT2146 at 2703.930 kb on + strand, within BT2146 at 2703.931 kb on - strand, within BT2146 at 2703.931 kb on - strand, within BT2146 at 2703.931 kb on - strand, within BT2146 at 2703.976 kb on - strand, within BT2146 at 2704.011 kb on - strand, within BT2146 at 2704.016 kb on + strand, within BT2146 at 2704.140 kb on + strand, within BT2146 at 2704.209 kb on + strand, within BT2146 at 2704.209 kb on + strand, within BT2146 at 2704.210 kb on - strand, within BT2146 at 2704.210 kb on - strand, within BT2146 at 2704.253 kb on + strand, within BT2146 at 2704.377 kb on + strand, within BT2146 at 2704.378 kb on - strand, within BT2146 at 2704.565 kb on - strand, within BT2146 at 2704.566 kb on + strand, within BT2146 at 2704.566 kb on + strand, within BT2146 at 2704.566 kb on + strand, within BT2146 at 2704.566 kb on + strand, within BT2146 at 2704.711 kb on - strand, within BT2146 at 2704.714 kb on - strand, within BT2146 at 2704.714 kb on - strand, within BT2146 at 2704.752 kb on - strand, within BT2146 at 2704.787 kb on + strand, within BT2146 at 2704.788 kb on - strand, within BT2146 at 2704.788 kb on - strand, within BT2146 at 2704.811 kb on + strand, within BT2146 at 2704.961 kb on + strand, within BT2146 at 2704.962 kb on - strand, within BT2146 at 2704.962 kb on - strand, within BT2146 at 2705.016 kb on + strand, within BT2146 at 2705.121 kb on - strand at 2705.285 kb on - strand at 2705.325 kb on + strand at 2705.329 kb on + strand at 2705.335 kb on + strand at 2705.373 kb on + strand at 2705.374 kb on - strand at 2705.471 kb on - strand at 2705.471 kb on - strand at 2705.563 kb on + strand at 2705.581 kb on - strand at 2705.599 kb on + strand at 2705.729 kb on + strand, within BT2147 at 2705.730 kb on - strand, within BT2147 at 2705.760 kb on + strand, within BT2147 at 2705.773 kb on + strand, within BT2147 at 2705.866 kb on - strand, within BT2147 at 2705.985 kb on + strand, within BT2147 at 2706.065 kb on + strand, within BT2147 at 2706.066 kb on - strand, within BT2147 at 2706.067 kb on + strand, within BT2147 at 2706.068 kb on - strand, within BT2147 at 2706.098 kb on + strand, within BT2147 at 2706.166 kb on + strand, within BT2147 at 2706.203 kb on + strand, within BT2147 at 2706.255 kb on + strand, within BT2147 at 2706.292 kb on + strand, within BT2147 at 2706.298 kb on + strand, within BT2147 at 2706.299 kb on - strand, within BT2147
Per-strain Table
Position Strand Gene LocusTag Fraction Amylopectin from Potato; autoclaved 2.5 mg/ml (C) remove 2,701,699 + BT2145 0.66 -1.6 2,701,700 - BT2145 0.66 -1.1 2,701,700 - BT2145 0.66 -0.3 2,701,702 + BT2145 0.66 +0.4 2,701,703 - BT2145 0.66 -0.9 2,701,724 + BT2145 0.67 -2.4 2,701,725 - BT2145 0.67 -1.8 2,701,841 - BT2145 0.72 +0.4 2,701,844 + BT2145 0.72 -0.6 2,701,875 + BT2145 0.73 -1.4 2,701,880 + BT2145 0.73 -0.9 2,701,883 - BT2145 0.74 -0.2 2,702,053 + BT2145 0.81 -0.6 2,702,068 + BT2145 0.81 -1.2 2,702,069 - BT2145 0.81 -0.6 2,702,106 + BT2145 0.83 +2.7 2,702,139 + BT2145 0.84 +0.8 2,702,140 - BT2145 0.84 -1.2 2,702,140 - BT2145 0.84 -0.6 2,702,142 + BT2145 0.84 +0.8 2,702,142 + BT2145 0.84 +2.0 2,702,154 - BT2145 0.85 +1.4 2,702,196 + BT2145 0.87 -0.6 2,702,395 + -1.6 2,702,395 + -1.6 2,702,395 + -1.4 2,702,512 + -1.6 2,702,524 + -1.7 2,702,533 + -1.8 2,702,533 + -1.6 2,702,538 + +0.4 2,702,587 - -2.0 2,702,604 - +0.4 2,702,639 - -1.6 2,702,643 + -1.6 2,702,643 + -1.9 2,702,644 - +1.4 2,702,644 - -0.3 2,702,645 + +1.4 2,702,646 - +0.4 2,702,749 + -0.9 2,702,749 + +1.4 2,702,751 + +1.7 2,702,751 + -1.2 2,702,751 + +0.4 2,702,806 - -1.2 2,702,886 - -1.8 2,702,902 - -0.6 2,702,943 + BT2146 0.11 -1.0 2,702,946 + BT2146 0.11 -1.3 2,702,978 - BT2146 0.12 +0.4 2,702,978 - BT2146 0.12 +0.4 2,703,218 + BT2146 0.21 -0.0 2,703,264 + BT2146 0.23 -0.9 2,703,319 - BT2146 0.25 -0.5 2,703,325 - BT2146 0.25 +0.8 2,703,325 - BT2146 0.25 -1.2 2,703,356 + BT2146 0.26 -1.2 2,703,358 + BT2146 0.27 -0.6 2,703,446 - BT2146 0.30 +1.4 2,703,466 + BT2146 0.31 -0.9 2,703,466 + BT2146 0.31 +0.4 2,703,488 + BT2146 0.31 -1.6 2,703,525 + BT2146 0.33 -0.2 2,703,527 + BT2146 0.33 -0.2 2,703,528 - BT2146 0.33 -0.5 2,703,528 - BT2146 0.33 -1.7 2,703,530 + BT2146 0.33 -2.0 2,703,530 + BT2146 0.33 -0.6 2,703,533 + BT2146 0.33 -0.9 2,703,571 + BT2146 0.34 +0.4 2,703,572 - BT2146 0.35 -0.3 2,703,572 - BT2146 0.35 -2.2 2,703,801 + BT2146 0.43 -1.1 2,703,860 + BT2146 0.45 -2.4 2,703,860 + BT2146 0.45 +2.0 2,703,861 - BT2146 0.45 +0.4 2,703,930 + BT2146 0.48 -0.6 2,703,931 - BT2146 0.48 -0.0 2,703,931 - BT2146 0.48 +0.4 2,703,931 - BT2146 0.48 -1.2 2,703,976 - BT2146 0.50 +0.4 2,704,011 - BT2146 0.51 -0.8 2,704,016 + BT2146 0.51 -0.5 2,704,140 + BT2146 0.56 -0.4 2,704,209 + BT2146 0.58 -0.6 2,704,209 + BT2146 0.58 +0.4 2,704,210 - BT2146 0.58 -0.0 2,704,210 - BT2146 0.58 -1.2 2,704,253 + BT2146 0.60 -0.5 2,704,377 + BT2146 0.65 +6.0 2,704,378 - BT2146 0.65 +1.0 2,704,565 - BT2146 0.72 -1.1 2,704,566 + BT2146 0.72 -1.8 2,704,566 + BT2146 0.72 -0.4 2,704,566 + BT2146 0.72 +0.4 2,704,566 + BT2146 0.72 +0.4 2,704,711 - BT2146 0.77 +0.4 2,704,714 - BT2146 0.77 -1.6 2,704,714 - BT2146 0.77 -1.2 2,704,752 - BT2146 0.79 -0.8 2,704,787 + BT2146 0.80 -1.1 2,704,788 - BT2146 0.80 -1.5 2,704,788 - BT2146 0.80 -0.6 2,704,811 + BT2146 0.81 +1.4 2,704,961 + BT2146 0.86 +0.4 2,704,962 - BT2146 0.86 -0.6 2,704,962 - BT2146 0.86 -1.1 2,705,016 + BT2146 0.88 -0.8 2,705,121 - -1.6 2,705,285 - -1.2 2,705,325 + +1.4 2,705,329 + -1.2 2,705,335 + -1.9 2,705,373 + -1.6 2,705,374 - -0.3 2,705,471 - -0.2 2,705,471 - +0.4 2,705,563 + -2.2 2,705,581 - -0.7 2,705,599 + -1.2 2,705,729 + BT2147 0.19 -0.7 2,705,730 - BT2147 0.19 -1.4 2,705,760 + BT2147 0.22 -1.2 2,705,773 + BT2147 0.23 -1.0 2,705,866 - BT2147 0.32 -0.2 2,705,985 + BT2147 0.44 +1.0 2,706,065 + BT2147 0.52 -1.9 2,706,066 - BT2147 0.52 -1.2 2,706,067 + BT2147 0.52 -0.6 2,706,068 - BT2147 0.52 -0.1 2,706,098 + BT2147 0.55 +0.4 2,706,166 + BT2147 0.62 -0.4 2,706,203 + BT2147 0.65 -1.9 2,706,255 + BT2147 0.71 +0.4 2,706,292 + BT2147 0.74 -1.3 2,706,298 + BT2147 0.75 -1.2 2,706,299 - BT2147 0.75 -0.2
Or see this region's nucleotide sequence