Experiment: Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT2125 and BT2126 are separated by 131 nucleotides BT2126 and BT2127 are separated by 29 nucleotides BT2127 and BT2128 overlap by 71 nucleotides
BT2125: BT2125 - hypothetical protein (NCBI ptt file), at 2,675,474 to 2,676,037
BT2125
BT2126: BT2126 - hypothetical protein (NCBI ptt file), at 2,676,169 to 2,676,975
BT2126
BT2127: BT2127 - putative beta-phosphoglucomutase (NCBI ptt file), at 2,677,005 to 2,677,679
BT2127
BT2128: BT2128 - conserved hypothetical protein (NCBI ptt file), at 2,677,609 to 2,680,554
BT2128
Position (kb)
2677
2678 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2676.011 kb on - strand at 2676.013 kb on + strand at 2676.087 kb on - strand at 2676.088 kb on + strand at 2676.109 kb on - strand at 2676.123 kb on + strand at 2676.145 kb on - strand at 2676.156 kb on - strand at 2676.204 kb on - strand at 2676.211 kb on - strand at 2676.356 kb on + strand, within BT2126 at 2676.471 kb on - strand, within BT2126 at 2676.522 kb on - strand, within BT2126 at 2676.523 kb on + strand, within BT2126 at 2676.523 kb on + strand, within BT2126 at 2676.523 kb on + strand, within BT2126 at 2676.524 kb on - strand, within BT2126 at 2676.524 kb on - strand, within BT2126 at 2676.524 kb on - strand, within BT2126 at 2676.525 kb on + strand, within BT2126 at 2676.526 kb on - strand, within BT2126 at 2676.526 kb on - strand, within BT2126 at 2676.526 kb on - strand, within BT2126 at 2676.528 kb on - strand, within BT2126 at 2676.528 kb on - strand, within BT2126 at 2676.594 kb on + strand, within BT2126 at 2676.730 kb on + strand, within BT2126 at 2676.731 kb on - strand, within BT2126 at 2676.732 kb on + strand, within BT2126 at 2676.762 kb on + strand, within BT2126 at 2676.804 kb on + strand, within BT2126 at 2676.841 kb on - strand, within BT2126 at 2676.882 kb on + strand, within BT2126 at 2676.882 kb on + strand, within BT2126 at 2676.973 kb on + strand at 2677.004 kb on + strand at 2677.004 kb on + strand at 2677.055 kb on + strand at 2677.068 kb on + strand at 2677.134 kb on + strand, within BT2127 at 2677.134 kb on + strand, within BT2127 at 2677.134 kb on + strand, within BT2127 at 2677.135 kb on - strand, within BT2127 at 2677.135 kb on - strand, within BT2127 at 2677.136 kb on + strand, within BT2127 at 2677.137 kb on - strand, within BT2127 at 2677.137 kb on - strand, within BT2127 at 2677.219 kb on + strand, within BT2127 at 2677.226 kb on + strand, within BT2127 at 2677.226 kb on + strand, within BT2127 at 2677.227 kb on - strand, within BT2127 at 2677.229 kb on - strand, within BT2127 at 2677.229 kb on - strand, within BT2127 at 2677.230 kb on + strand, within BT2127 at 2677.278 kb on - strand, within BT2127 at 2677.461 kb on + strand, within BT2127 at 2677.476 kb on - strand, within BT2127 at 2677.547 kb on + strand, within BT2127 at 2677.548 kb on - strand, within BT2127 at 2677.638 kb on - strand at 2677.698 kb on + strand at 2677.698 kb on + strand at 2677.699 kb on - strand at 2677.699 kb on - strand at 2677.699 kb on - strand at 2677.701 kb on + strand at 2677.721 kb on + strand at 2677.811 kb on + strand at 2677.952 kb on - strand, within BT2128 at 2678.111 kb on + strand, within BT2128 at 2678.111 kb on + strand, within BT2128 at 2678.113 kb on + strand, within BT2128 at 2678.114 kb on - strand, within BT2128 at 2678.115 kb on + strand, within BT2128 at 2678.115 kb on + strand, within BT2128 at 2678.116 kb on - strand, within BT2128 at 2678.153 kb on + strand, within BT2128 at 2678.162 kb on + strand, within BT2128 at 2678.162 kb on + strand, within BT2128 at 2678.197 kb on - strand, within BT2128 at 2678.271 kb on - strand, within BT2128 at 2678.323 kb on - strand, within BT2128 at 2678.324 kb on + strand, within BT2128 at 2678.324 kb on + strand, within BT2128 at 2678.324 kb on + strand, within BT2128 at 2678.325 kb on - strand, within BT2128 at 2678.325 kb on - strand, within BT2128 at 2678.334 kb on - strand, within BT2128 at 2678.334 kb on - strand at 2678.398 kb on + strand, within BT2128 at 2678.398 kb on + strand, within BT2128 at 2678.399 kb on - strand, within BT2128 at 2678.399 kb on - strand, within BT2128 at 2678.402 kb on - strand, within BT2128 at 2678.411 kb on - strand, within BT2128 at 2678.466 kb on - strand, within BT2128 at 2678.587 kb on - strand, within BT2128 at 2678.625 kb on + strand, within BT2128 at 2678.655 kb on - strand, within BT2128
Per-strain Table
Position Strand Gene LocusTag Fraction Amylopectin from Potato; autoclaved 2.5 mg/ml (C) remove 2,676,011 - +0.1 2,676,013 + -1.4 2,676,087 - -1.6 2,676,088 + +0.4 2,676,109 - -1.6 2,676,123 + +0.7 2,676,145 - -1.2 2,676,156 - -0.6 2,676,204 - -2.2 2,676,211 - +0.4 2,676,356 + BT2126 0.23 -1.6 2,676,471 - BT2126 0.37 -0.6 2,676,522 - BT2126 0.44 -0.6 2,676,523 + BT2126 0.44 -1.1 2,676,523 + BT2126 0.44 -3.9 2,676,523 + BT2126 0.44 -1.2 2,676,524 - BT2126 0.44 -0.9 2,676,524 - BT2126 0.44 +0.4 2,676,524 - BT2126 0.44 -1.7 2,676,525 + BT2126 0.44 -1.3 2,676,526 - BT2126 0.44 -2.4 2,676,526 - BT2126 0.44 -1.1 2,676,526 - BT2126 0.44 -3.4 2,676,528 - BT2126 0.44 -0.6 2,676,528 - BT2126 0.44 -0.6 2,676,594 + BT2126 0.53 -0.4 2,676,730 + BT2126 0.70 +1.8 2,676,731 - BT2126 0.70 -1.8 2,676,732 + BT2126 0.70 -1.3 2,676,762 + BT2126 0.73 -1.8 2,676,804 + BT2126 0.79 +0.4 2,676,841 - BT2126 0.83 -1.7 2,676,882 + BT2126 0.88 -0.6 2,676,882 + BT2126 0.88 -1.6 2,676,973 + +1.0 2,677,004 + -1.2 2,677,004 + -1.2 2,677,055 + +1.0 2,677,068 + +0.4 2,677,134 + BT2127 0.19 -1.2 2,677,134 + BT2127 0.19 -1.4 2,677,134 + BT2127 0.19 -1.2 2,677,135 - BT2127 0.19 -1.2 2,677,135 - BT2127 0.19 -1.2 2,677,136 + BT2127 0.19 -0.7 2,677,137 - BT2127 0.20 +0.4 2,677,137 - BT2127 0.20 -1.3 2,677,219 + BT2127 0.32 -1.1 2,677,226 + BT2127 0.33 +0.4 2,677,226 + BT2127 0.33 -1.9 2,677,227 - BT2127 0.33 -0.8 2,677,229 - BT2127 0.33 -2.2 2,677,229 - BT2127 0.33 +0.7 2,677,230 + BT2127 0.33 +1.0 2,677,278 - BT2127 0.40 -0.2 2,677,461 + BT2127 0.68 +0.4 2,677,476 - BT2127 0.70 -2.2 2,677,547 + BT2127 0.80 +0.4 2,677,548 - BT2127 0.80 -1.3 2,677,638 - -0.6 2,677,698 + -1.3 2,677,698 + -3.9 2,677,699 - -0.2 2,677,699 - -0.6 2,677,699 - -1.2 2,677,701 + +0.4 2,677,721 + -0.8 2,677,811 + -0.2 2,677,952 - BT2128 0.12 -1.1 2,678,111 + BT2128 0.17 -0.8 2,678,111 + BT2128 0.17 +0.1 2,678,113 + BT2128 0.17 -0.9 2,678,114 - BT2128 0.17 -0.5 2,678,115 + BT2128 0.17 -0.5 2,678,115 + BT2128 0.17 -0.6 2,678,116 - BT2128 0.17 +0.1 2,678,153 + BT2128 0.18 -1.6 2,678,162 + BT2128 0.19 -0.6 2,678,162 + BT2128 0.19 -2.1 2,678,197 - BT2128 0.20 -1.5 2,678,271 - BT2128 0.22 -0.9 2,678,323 - BT2128 0.24 -1.2 2,678,324 + BT2128 0.24 -0.6 2,678,324 + BT2128 0.24 -0.4 2,678,324 + BT2128 0.24 -1.9 2,678,325 - BT2128 0.24 -1.3 2,678,325 - BT2128 0.24 +1.4 2,678,334 - BT2128 0.25 +1.4 2,678,334 - +1.0 2,678,398 + BT2128 0.27 +0.2 2,678,398 + BT2128 0.27 -1.3 2,678,399 - BT2128 0.27 -1.4 2,678,399 - BT2128 0.27 -0.6 2,678,402 - BT2128 0.27 -1.6 2,678,411 - BT2128 0.27 -1.6 2,678,466 - BT2128 0.29 -1.2 2,678,587 - BT2128 0.33 -0.3 2,678,625 + BT2128 0.34 -1.9 2,678,655 - BT2128 0.36 -2.3
Or see this region's nucleotide sequence