Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2127

Experiment: Amylopectin from Potato; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
2,676,011	-				+0.1
2,676,013	+				-1.4
2,676,087	-				-1.6
2,676,088	+				+0.4
2,676,109	-				-1.6
2,676,123	+				+0.7
2,676,145	-				-1.2
2,676,156	-				-0.6
2,676,204	-				-2.2
2,676,211	-				+0.4
2,676,356	+		BT2126	0.23	-1.6
2,676,471	-		BT2126	0.37	-0.6
2,676,522	-		BT2126	0.44	-0.6
2,676,523	+		BT2126	0.44	-1.1
2,676,523	+		BT2126	0.44	-3.9
2,676,523	+		BT2126	0.44	-1.2
2,676,524	-		BT2126	0.44	-0.9
2,676,524	-		BT2126	0.44	+0.4
2,676,524	-		BT2126	0.44	-1.7
2,676,525	+		BT2126	0.44	-1.3
2,676,526	-		BT2126	0.44	-2.4
2,676,526	-		BT2126	0.44	-1.1
2,676,526	-		BT2126	0.44	-3.4
2,676,528	-		BT2126	0.44	-0.6
2,676,528	-		BT2126	0.44	-0.6
2,676,594	+		BT2126	0.53	-0.4
2,676,730	+		BT2126	0.70	+1.8
2,676,731	-		BT2126	0.70	-1.8
2,676,732	+		BT2126	0.70	-1.3
2,676,762	+		BT2126	0.73	-1.8
2,676,804	+		BT2126	0.79	+0.4
2,676,841	-		BT2126	0.83	-1.7
2,676,882	+		BT2126	0.88	-0.6
2,676,882	+		BT2126	0.88	-1.6
2,676,973	+				+1.0
2,677,004	+				-1.2
2,677,004	+				-1.2
2,677,055	+				+1.0
2,677,068	+				+0.4
2,677,134	+		BT2127	0.19	-1.2
2,677,134	+		BT2127	0.19	-1.4
2,677,134	+		BT2127	0.19	-1.2
2,677,135	-		BT2127	0.19	-1.2
2,677,135	-		BT2127	0.19	-1.2
2,677,136	+		BT2127	0.19	-0.7
2,677,137	-		BT2127	0.20	+0.4
2,677,137	-		BT2127	0.20	-1.3
2,677,219	+		BT2127	0.32	-1.1
2,677,226	+		BT2127	0.33	+0.4
2,677,226	+		BT2127	0.33	-1.9
2,677,227	-		BT2127	0.33	-0.8
2,677,229	-		BT2127	0.33	-2.2
2,677,229	-		BT2127	0.33	+0.7
2,677,230	+		BT2127	0.33	+1.0
2,677,278	-		BT2127	0.40	-0.2
2,677,461	+		BT2127	0.68	+0.4
2,677,476	-		BT2127	0.70	-2.2
2,677,547	+		BT2127	0.80	+0.4
2,677,548	-		BT2127	0.80	-1.3
2,677,638	-				-0.6
2,677,698	+				-1.3
2,677,698	+				-3.9
2,677,699	-				-0.2
2,677,699	-				-0.6
2,677,699	-				-1.2
2,677,701	+				+0.4
2,677,721	+				-0.8
2,677,811	+				-0.2
2,677,952	-		BT2128	0.12	-1.1
2,678,111	+		BT2128	0.17	-0.8
2,678,111	+		BT2128	0.17	+0.1
2,678,113	+		BT2128	0.17	-0.9
2,678,114	-		BT2128	0.17	-0.5
2,678,115	+		BT2128	0.17	-0.5
2,678,115	+		BT2128	0.17	-0.6
2,678,116	-		BT2128	0.17	+0.1
2,678,153	+		BT2128	0.18	-1.6
2,678,162	+		BT2128	0.19	-0.6
2,678,162	+		BT2128	0.19	-2.1
2,678,197	-		BT2128	0.20	-1.5
2,678,271	-		BT2128	0.22	-0.9
2,678,323	-		BT2128	0.24	-1.2
2,678,324	+		BT2128	0.24	-0.6
2,678,324	+		BT2128	0.24	-0.4
2,678,324	+		BT2128	0.24	-1.9
2,678,325	-		BT2128	0.24	-1.3
2,678,325	-		BT2128	0.24	+1.4
2,678,334	-		BT2128	0.25	+1.4
2,678,334	-				+1.0
2,678,398	+		BT2128	0.27	+0.2
2,678,398	+		BT2128	0.27	-1.3
2,678,399	-		BT2128	0.27	-1.4
2,678,399	-		BT2128	0.27	-0.6
2,678,402	-		BT2128	0.27	-1.6
2,678,411	-		BT2128	0.27	-1.6
2,678,466	-		BT2128	0.29	-1.2
2,678,587	-		BT2128	0.33	-0.3
2,678,625	+		BT2128	0.34	-1.9
2,678,655	-		BT2128	0.36	-2.3